Panulirus ornatus (ornate spiny lobster): 139763083
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Entry
139763083 CDS
T10834
Symbol
Rat1
Name
(RefSeq) 5'-3' exoribonuclease 2 homolog isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03008
Ribosome biogenesis in eukaryotes
porn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
139763083 (Rat1)
09123 Folding, sorting and degradation
03018 RNA degradation
139763083 (Rat1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
porn03021
]
139763083 (Rat1)
03019 Messenger RNA biogenesis [BR:
porn03019
]
139763083 (Rat1)
03009 Ribosome biogenesis [BR:
porn03009
]
139763083 (Rat1)
03016 Transfer RNA biogenesis [BR:
porn03016
]
139763083 (Rat1)
Transcription machinery [BR:
porn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139763083 (Rat1)
Messenger RNA biogenesis [BR:
porn03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
139763083 (Rat1)
Ribosome biogenesis [BR:
porn03009
]
Eukaryotic type
Pre-60S particles
RNases
139763083 (Rat1)
Transfer RNA biogenesis [BR:
porn03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
139763083 (Rat1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
139763083
NCBI-ProteinID:
XP_071544804
LinkDB
All DBs
Position
46:3672745..3715698
Genome browser
AA seq
1237 aa
AA seq
DB search
MGVPAFFRWLSRKYPSVIIECVEDKQYDTEEGKPIPQDTSKPNPNGVEFDNLYLDMNGII
HPCTHPEDKPAPKDEDEMMVAIFECIDRLFAIVRPRKLLYMAIDGVAPRAKMNQQRSRRF
RASKEAFEKKEEVARIRQELQDKGFNVPPEKPKESHFDSNCITPGTPFMDRLSRCLHYYV
HDRLNTDPGWRGIKVILSDANVPGEGEHKIMDYIRRQRSHPDHDPNTQHCLCGADADLIM
LGLATHEANFTVIREEFKPNKPKPCDICGQLGHDLRDCIGVSDGSSGEAEKVYEETRYIF
VRLNVLREYLEKDLLMPGLPFKYDFDRAVDDWVFMCFFVGNDFLPHLPSLEIRENAIDRL
VRLYKDCCYKTGGWLTDSGTANMNRVQIILQNLGKVEDEIFKMRQKRELDFKERDREKRR
SEKREKEAANRFRDSTGEGALAVMKAGETSVAHGAKDAIMEQRYKNMDAEGGGRGLKRSI
DSVDLSSDEEEETPDEVRLYEEGAKDRYYESKFEVSPDNIEFRKGVADEYARGLCWVLKY
YYQGCVSWDWYFPYHYAPFASDFTNCADVDVTFHLGEPFNPLEQLMGVFPAASRSHVPEP
WGELMCDPESVIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEKRLKKALESVYPLLTPEE
VRRNKRGDDRLYVSIKHEAYSQLSDMYRMGMNMETEVPISGNEYQGMQGTVLLASDVVEP
NGSLKSPVSGLDTLENNQVVTVRFRDPQYPADFVFPARKLPKAKAPPRVLKPQDLSESQS
RDYRPQIGFNRNMPRASLNKAGHRALGHLLPNLHGGGLYSNNVPLLQGARGGQGLLGASP
GLLPTPPGPGSLLGSGLGGQGGFFGSGLGGQDGLLGTGPGQGALLGSGPGVQGNPLGSGV
GVQGSALGSMLGQGNSLKAGKGRGSILGVGPQQQGLLGNGPQVWADGAGPQGNQQGGLLG
SYPQQDDMHGRRNQMGGLLGSKPHDEDMYGGGNQLGSPLQHQNRYGRGKQQGSLLGDIPQ
QEDMYGRGPKLGSLLGSGPLHGKSYKMNYEEGSLLGAGPDQDYYQSDMDQGGLLDMSPPM
SHYMNRGGGGGGGQYASVPPPQGGRGGGYGGRGGNRGLLGSPPLMSQSSDYHSSQGNSYS
GGQGGYRGSRQNQSYNSGGGYNSSRNMGGYSSNQRHGSGGYGYGSGSNSGGFGYNSGGYS
YSSGGSSGGYNRNNNWSSSSHQGGRGRGGRGYYTSNN
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccagcattcttccgatggctatctagaaaatatccgtcagtgattatagag
tgtgtcgaggataagcaatatgacacagaagagggcaaaccaatacctcaggatacttca
aagcctaatccaaatggggtggaatttgacaacctttatctggatatgaatggcattatt
cacccttgtacacatccagaagataaacctgcaccaaaggatgaagatgagatgatggtt
gcaatatttgagtgtatcgaccgtttgtttgcaattgtacgcccacggaaacttctgtat
atggctattgatggagttgctccaagagccaagatgaaccagcagagatccagaagattt
agggcatcaaaagaagccttcgaaaagaaagaagaagtggctcgcataagacaagaactc
caagacaaaggttttaatgttccccctgaaaaaccaaaggaatcacattttgactccaat
tgtattactcctgggacacccttcatggaccgtctctctagatgtctccattattatgtt
catgatcgactcaacactgatccaggctggaggggtattaaggtgatcctttcggatgct
aatgttcctggtgaaggggagcataagatcatggactatatccgtcgtcagcgctctcat
ccagatcatgacccaaatacccaacattgtttatgtggtgctgatgctgatctaataatg
ctgggattagccactcatgaagctaattttacagtaatccgtgaagagttcaagcctaac
aagcctaagccttgtgatatatgtggacagcttggtcacgatttgagagattgtattggc
gtatctgatggctcaagtggagaagcagaaaaagtgtacgaggagactcgatacatcttt
gtacggcttaatgtgctacgagaatatctggagaaagatttactcatgccaggcctccct
tttaaatatgattttgatcgagctgttgatgattgggtattcatgtgcttttttgttgga
aatgattttcttcctcacctgccgtccctcgagattcgtgagaatgccattgatcgctta
gtgcgcctgtacaaggattgctgttacaaaactggcggttggttgacggatagtggaact
gccaatatgaatcgtgtacagatcatcctgcaaaatcttggtaaagttgaagatgagata
ttcaaaatgcgtcagaagcgagaacttgacttcaaagaaagagacagagaaaagagaaga
tcagaaaagagagagaaggaagctgcaaatcggttcagggattcaacaggtgagggagct
cttgcagttatgaaggccggagaaacttctgtagcacatggtgcaaaagatgctatcatg
gaacaacgctataagaatatggatgctgaaggtggaggccgtggtttgaaacgaagcata
gacagtgttgacctctcatcagatgaagaagaggaaactccagatgaagttaggctttat
gaagaaggtgcaaaagaccgctactacgaatcaaagtttgaagtaagccctgacaacata
gaattcaggaaaggagttgctgatgaatatgctcgtggtctttgttgggtgttaaagtac
tactaccagggctgtgtatcatgggattggtatttcccctatcactatgctccatttgcc
tcagatttcacaaattgtgccgatgtagatgtgacgtttcacttgggtgaaccatttaat
cccttagaacaactcatgggtgtgttccctgcagcaagtcgttctcatgttccagagcct
tggggcgaattgatgtgtgatccagagtctgtaattattgatttctatccagaagacttt
aaaattgacttgaatggcaagaaatttgcttggcagggtgttgcacttttaccctttgtt
gatgagaagagattaaagaaagccctagaatcagtttatcctttgttgacaccagaagaa
gtacgccgtaacaagagaggtgacgaccgtctttatgtcagtatcaagcatgaagcatat
agccagctgtcagatatgtatcgaatgggaatgaacatggagactgaggtcccaatatct
ggcaacgaatatcaaggcatgcagggaactgtgctgttggcaagtgacgttgtggaacct
aatggttctttgaagtctcctgttagtggtttggatactcttgaaaacaatcaagtggtg
acagtcaggttccgtgatcctcagtaccctgcagacttcgttttcccagccagaaagctt
ccaaaagcaaaggcacctccacgtgtactgaaaccacaggacttatcggagagtcagtcc
agagattatcgtccacagattggtttcaacaggaatatgccaagggcatctctcaacaaa
gctggccatagagctctaggccacctcctgccgaaccttcatggtggagggctgtacagc
aacaacgtgccgctcctgcagggtgcacgaggagggcaaggacttctaggagcaagtcca
gggcttcttccgactccaccaggacctgggagcctcctgggatcaggtctaggtggacaa
ggaggcttctttgggtcaggactaggaggtcaagacggtcttcttggaacaggaccagga
caaggggccctcctaggatcaggaccaggagtgcaaggaaacccccttggttcaggtgtt
ggtgtccagggaagtgctcttgggtcaatgctagggcagggaaattcactaaaagctgga
aagggacgtggaagcattctaggagtaggaccacagcaacaaggattgttaggaaatgga
cctcaagtgtgggcagatggtgcaggaccacagggaaaccaacagggaggtctgcttggg
tcatatccccagcaggatgacatgcatggaaggcgtaaccaaatgggaggcctattagga
tcaaaaccacacgatgaagatatgtatggaggtggaaaccaattaggatcaccattacaa
catcagaatagatatggaaggggaaagcaacaaggaagcctgctaggagatatacctcag
caggaggatatgtatggaagggggcccaaactgggaagtcttcttggttcaggtcccctt
catggaaaatcctacaaaatgaactatgaggagggaagccttcttggagcaggaccagat
caagattattaccagtcggacatggaccaaggaggccttctcgacatgtccccacccatg
agtcactacatgaatcgtggaggaggaggaggaggaggccagtatgccagtgtacctcct
ccccaaggtggtcgtgggggaggttatggtggcagaggtggcaatagaggcctcctaggt
tcaccaccattgatgagtcagtcctctgattaccacagctcacaaggaaacagctatagt
ggtggccaaggaggctacagagggagtagacagaaccagtcctataacagtggagggggt
tacaacagcagcagaaacatgggaggctacagtagtaatcagagacatggctcaggtggt
tatggctatggatctggaagtaattcaggtggctttggttacaattcaggaggttacagc
tacagttcaggagggagcagtggtggttataacagaaataataattggagctccagctcg
caccagggtggcagaggaagaggtggtcgtggttattatacatcaaataattaa
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integrated database retrieval system
