Panulirus ornatus (ornate spiny lobster): 139763296
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Entry
139763296 CDS
T10834
Symbol
Hel25E
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03013
Nucleocytoplasmic transport
porn03015
mRNA surveillance pathway
porn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139763296 (Hel25E)
09122 Translation
03013 Nucleocytoplasmic transport
139763296 (Hel25E)
03015 mRNA surveillance pathway
139763296 (Hel25E)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
porn03019
]
139763296 (Hel25E)
03041 Spliceosome [BR:
porn03041
]
139763296 (Hel25E)
Enzymes [BR:
porn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139763296 (Hel25E)
Messenger RNA biogenesis [BR:
porn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
139763296 (Hel25E)
Spliceosome [BR:
porn03041
]
Complex C
Other components
EJC/TREX
139763296 (Hel25E)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
139763296 (Hel25E)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
139763296
NCBI-ProteinID:
XP_071545365
LinkDB
All DBs
Position
46:complement(40616191..40669472)
Genome browser
AA seq
427 aa
AA seq
DB search
MADQETELLDYEEDEDAVEAGVGETNEAAPAKKDVKGTYVSIHSSGFRDFLLKPEILRAI
VDCGFEHPSEVQHECIPQAVLGMDILGQAKSGMGKTAVFVLATLQQIDPVDGQVSVLVMC
HTRELAYQIAKEYERFSKYMPTVKVGVFFGGMNIQKDEETLKNNCPHIVVGTPGRVLALV
RNKKLNLRHLKHFVLDECDKMLEQLDMRRDVQEIFRNTPHEKQVMMFSATLSKEIRPVCK
KFMQDPMEVYVDDEAKLTLHGLQQHYVKIKENEKNRKLFELLDALEFNQVVIFVKSVQRC
MALAQLLVEQNFPAIAIHRAMQQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVF
NYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSEESDAKTLNEVQERFDVNITELPDEIDL
SSYIEGR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggctgaccaagaaactgagcttctggattatgaggaagatgaagatgcggtggaagca
ggagtaggggagaccaatgaggcagcccctgcaaagaaagatgtcaaaggtacctacgtg
tccatccattcttcaggattccgagatttccttctcaaaccagagatattgcgagctatt
gttgattgtggatttgagcatccctcagaagtgcaacatgagtgtattccacaagctgtg
ttgggtatggacatccttggccaggccaagtctggaatgggcaaaacggcagtgtttgtg
ttggcaactttacagcagattgacccagttgatggccaggtgtctgtactagtgatgtgc
cacacccgtgaattggcatatcagattgccaaagaatatgagcgatttagtaagtacatg
cccactgtcaaggttggtgtgttctttggaggcatgaatattcagaaggatgaggaaact
cttaaaaataattgccctcatatagttgtgggtacaccaggtcgtgtccttgccctggtt
cgcaacaagaagctgaatctccgtcatctcaagcactttgttttagatgagtgtgataaa
atgcttgaacaactagacatgcgtcgtgatgtgcaggaaatctttcgcaacactcctcat
gagaagcaagtgatgatgttcagcgctacactgagcaaggagattcgtccagtttgcaag
aagttcatgcaggatcccatggaggtttatgttgatgatgaagcaaagcttactcttcac
gggcttcaacaacattatgtcaagataaaggagaatgaaaagaacaggaaattgtttgag
ttgcttgatgctctagaatttaaccaggttgtgatatttgtgaagtctgttcagcggtgc
atggctttggcccagttgctggtggagcagaacttcccagccattgctatacatagggct
atgcagcaggaggaaagacttagccgctaccagcaattcaaagattttcagaagcggatt
cttgttgctaccaacctgtttggccgtggaatggatattgagagagtaaacatagtcttc
aattatgacatgcctgaggatagtgacacataccttcatcgtgtagcaagagcaggaaga
tttggtactaagggtttagctgtaacatttgtcagtgaagagagtgatgctaagaccctc
aatgaagtgcaagaaagatttgatgttaatatcactgaactgcctgatgaaatcgacctt
tcatcatatattgaagggcgctaa
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