Panulirus ornatus (ornate spiny lobster): 139764632
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Entry
139764632 CDS
T10834
Symbol
Smg5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139764632 (Smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
porn03019
]
139764632 (Smg5)
03032 DNA replication proteins [BR:
porn03032
]
139764632 (Smg5)
Messenger RNA biogenesis [BR:
porn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
139764632 (Smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
139764632 (Smg5)
DNA replication proteins [BR:
porn03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
139764632 (Smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
139764632
NCBI-ProteinID:
XP_071547582
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All DBs
Position
50:15263493..15344803
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AA seq
959 aa
AA seq
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MRRSTLTTGERADNLEQVKKLTKHVSECVRRANAALGEAGVVGAIFTAQAVGVRARLRDA
CERVILMAPGPQARRMEEILWRKVYYEPLTAAKKMRKGNIWTSGEACWVCGHLWNGVAYY
HQLLHSLAHTYQLESRLADLLPYLNNDNDIGVVASPSGESGGDSIHRCLTCLGDLTRYML
DLPSPPPYHLPVRYYLQALHYYPEGGLTHSNLATVYGTSDQSLLAVAHYLRALTCEKNFE
GAEGNLKRLLDKSRAIYENGDDGNEKSLTHHHKMFLHTVLTLVSCFVNNRATEEIARLCQ
DVLVLLGKVLETYDDADNEVSERSPSPGTPANGYHPNSILNGHDSPVDTQEKMMALFSLT
PEAMVAVCAVLCICIKRLKKQGSSHTSMAEALLVSVLMTLVSHVTSRLEQRISLVDPLFL
SRLLPENEKKCQEENSNETSLVQKEDKENADFVIESGDSKTPKKKKSGLGNRLASLRRRR
RINGDGSIASDDELSGSDASGSEDNECKDGNEEAVTSEEEEEEEEEEELDLSQLCSSEDE
DDSDEDVKIESDQEWEGLSAGEHLELIGKEGMLAAVFVACDWLKREDEVIHLCMKTADSL
WTAIAKLLNLIKVDLDQLKNNSLGMRIDVIGLLQECDGALTVSHPSTLVEALQATPLPED
LMLHTLIATYLPGSHKSLNLKGVEQVLLRVKRVCEFGQEMASRLDTPLWCNTESGVFSFS
MDGVVVDEKVKNKDTGMGTLSREASTSPTEEDLLSVPPAKKESRRLAGMQSLTAQWLQHE
VRNLEERTARRATLGLYLVPDASVLINHLQAIKMILAKPTHMIIIPQAVIDLLDQQKRES
LGARDAIRWLEIKFRHGSRFIRAQRPHERTHLPLIKYPKRKDKEAWEWYQIVECCHYLSA
QVQQKSTNMKTATVTLLTGEKHPPNTTFSHSGLTHAAGAVLEHIEEFMRKWQTSTKGHS
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgaggagatcaacactgaccacaggggaaagggctgacaaccttgaacaagtcaaaaag
cttacgaagcatgtgagcgagtgtgttcgtcgtgcaaatgcagcactgggagaggcaggg
gtggtgggggccatatttacagcgcaggctgttggggtgcgggccagactgagggatgca
tgtgagcgggttattttgatggcccctggcccccaagcacgacgtatggaggagatactt
tggcgtaaagtctactatgaacctttgactgcagccaagaagatgagaaagggtaatata
tggacaagtggtgaggcatgttgggtatgtggtcacctttggaatggagttgcttactat
catcaacttctacactcccttgcacacacctaccagctggagtctcgcttggctgattta
ttgccttatctgaacaatgataatgacattggcgtggttgcctcaccatctggagaaagt
ggtggtgattctatacaccggtgcctaacatgtttgggtgatctgacacgttacatgctg
gatctcccatcccctccaccataccatcttccagttcgctactacctacaggcccttcac
tactaccctgagggtggcttaacacacagtaacttggcaactgtctatggaacaagtgac
cagtcgttgttagctgtggcacattatctaagagccctgacgtgtgaaaaaaattttgaa
ggcgccgagggcaacctgaaacggctgctggataagagtcgggctatctatgagaatgga
gatgatggaaatgagaaaagtctcacacatcatcataaaatgtttctacatactgttctc
actcttgtgtcttgttttgtcaacaacagagccacagaagaaattgcaaggttgtgtcaa
gatgtgttagttctacttggaaaggttttggaaacctatgatgatgctgacaatgaggta
tcagagaggtctccttcacctggaacaccagcaaatggctaccatccaaactcaatcctg
aatgggcatgattctccagtagatactcaagaaaagatgatggcacttttcagtctaacc
cctgaagctatggttgctgtctgtgctgttttatgtatttgtatcaagagactgaagaaa
caaggatcatcacatacaagcatggctgaagctcttctggtatctgttcttatgactctc
gtttcccatgtcacaagtcgactcgagcaacgcatctctcttgttgatcccttattccta
agtaggcttctccctgaaaatgaaaagaaatgtcaagaagaaaatagtaatgaaacatct
ctagtgcagaaagaagataaggagaatgcagattttgtaattgaaagtggagattcaaaa
actcccaagaaaaaaaaaagtggtcttggcaatcggttggccagtcttcgaagacgacgt
agaattaatggtgatggctccattgctagtgatgatgaacttagtggctcagatgcatca
ggaagtgaagacaatgaatgtaaagatggcaatgaggaagctgtaacaagtgaagaggag
gaagaggaggaggaggaggaagaattagatctttctcagttgtgttcttctgaagatgaa
gatgattcagatgaagatgtaaagattgaatctgaccaggagtgggaaggccttagtgct
ggggaacacttagagctcattggtaaagagggcatgttagcagctgtgtttgttgcatgc
gactggctgaaaagggaagatgaggtcatccatctatgcatgaagactgcagactctctg
tggacagcaattgctaaacttctgaacttgataaaggtggatctagatcagcttaagaac
aactcacttggaatgcggattgatgttattggccttctccaagagtgtgatggagcctta
acagtcagtcatcccagtactttggttgaggctctgcaggcaactccattgcctgaagat
ctcatgctacatactctgattgccacctacctgccaggctcccacaagtctctcaatctt
aagggagttgagcaggtactgctgagagtgaagcgtgtgtgtgaatttggccaagaaatg
gcaagtcgacttgatactcctctgtggtgcaatacagaatctggggtgttcagcttctct
atggatggtgtagttgttgatgaaaaagtaaaaaataaagacactggcatgggaacccta
agtcgagaagcatctacatccccgactgaagaagatctcctgtctgttccaccagcaaag
aaggaatcacggcgattagcaggcatgcagtcactcactgcacagtggttgcagcatgaa
gtacgtaacttggaagagcgtactgctcgtcgtgccaccttaggcctgtacttagttcca
gatgcatcagtgcttattaaccacctccaggctatcaaaatgattcttgcaaagcctacg
catatgattatcattccacaagcagttattgacttgctggaccaacagaagcgagaaagt
ttgggtgcacgtgatgccatccgctggcttgagattaagtttcgtcacggctcaaggttt
attagagcccagcgtccccatgaacggactcacctaccccttattaaataccctaaacgc
aaggacaaagaagcgtgggagtggtaccaaattgtggaatgttgccattatttgagtgca
caggtacagcaaaagtctaccaacatgaaaactgcaacagtaaccctcttgacgggggag
aaacacccacccaataccaccttctctcactctggcctcacccatgctgcaggcgcagta
ttggagcacatcgaggagttcatgcgtaagtggcaaacatcaaccaaaggacacagctga
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