Panulirus ornatus (ornate spiny lobster): 139765816
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Entry
139765816 CDS
T10834
Symbol
mrn
Name
(RefSeq) general transcription factor IIH subunit 4 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03022
Basal transcription factors
porn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139765816 (mrn)
09124 Replication and repair
03420 Nucleotide excision repair
139765816 (mrn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
porn03021
]
139765816 (mrn)
03400 DNA repair and recombination proteins [BR:
porn03400
]
139765816 (mrn)
Transcription machinery [BR:
porn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
139765816 (mrn)
DNA repair and recombination proteins [BR:
porn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
139765816 (mrn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Pus10_C
Motif
Other DBs
NCBI-GeneID:
139765816
NCBI-ProteinID:
XP_071549711
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All DBs
Position
56:complement(2021458..2055670)
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AA seq
465 aa
AA seq
DB search
MVAFGPQTLTCKNLQDYLKALSKSTLDALYNHPATCLAVFRELPELSRQFILRLLFVNKP
LPQVLLATWIPQHEPGRDLGDIATEHRQGTQILLDMCIWQEVKDHQGNMAIKLSNTFREN
LKVAMLGGGKPWTMSATLDPDPHQRDVEFLDKYAMDRWESVLQFLVQPGRGQTAISRDAM
RTLLHAGLIESSDESDNMQITSSGFQFLLLDTSSQVWYFILKYLETVTERGLSLVACLTF
LFKLSFSILGKDYSMEGMDNELLTFLQHLREFGLVYLRKRISGRFYPTRLALNITAGQNK
GTIDVPKQGYLVIETNYRIYAYTTSELQISLLNIFSDIEGRFPNMVVASISRSSVRRAFL
KGIGAEQIISFLKQHCHPQMFKLNSVVPRTVADQIKLWEMERERLEFSEGVLYKDFMSIH
DFSLLSNFASSKGVLIYSDDKQRTMVVTKKGHPAIKLFWKEAQAK
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggtggcgtttggtccacagactttaacgtgcaaaaatctccaagattacctgaaagct
ctgtccaaaagtaccttggacgcgttgtacaatcatccggcaacgtgtttagcagtcttc
cgagaactcccagaactaagtagacagttcatactacgattgctgtttgtcaacaaacct
ctccctcaagtgttgctggccacttggatacctcagcatgaaccaggcagagaccttggg
gacattgcgacagaacaccggcagggaacacagatcctgctcgatatgtgcatctggcag
gaggtgaaggaccaccaagggaatatggccatcaaactcagcaacactttcagagagaac
ctcaaggttgcgatgcttggaggaggaaaaccttggaccatgtctgctactttggaccca
gacccacatcaacgagatgttgagtttcttgacaaatatgcaatggatagatgggaaagt
gttcttcagttccttgtgcagccaggacggggccagacagccatttcccgagatgccatg
cgcactttacttcatgcaggtctgattgaaagtagtgatgaatcagacaatatgcagatc
acaagttcgggatttcagtttctgctacttgacacttcgtcacaagtttggtactttatc
ctgaaatacttggagactgttacagagcggggtcttagtcttgtggcatgtttgacattc
ctcttcaagctctctttctcaattcttggtaaggattacagcatggagggcatggacaat
gaactcctcactttcctgcagcatcttcgtgaatttggtctggtttacttgcgtaaacgt
atttctggtagattttatcctacaagattggctcttaacatcactgctgggcagaacaag
ggtacaattgatgttccaaagcaaggatacttagtgattgagacaaattaccgaatatat
gcctataccacctcagagctccagatatcacttctcaacattttttctgatatagaaggc
agattccccaatatggtggtggcaagcatctcccgtagcagtgttcgacgtgctttcttg
aaaggtattggagcagagcagattataagtttcctgaagcagcactgtcatcctcagatg
ttcaagctaaattcagttgttccccgtactgtggcagaccagataaagctgtgggagatg
gagagagaacgcctagaattcagtgaaggtgtgctctacaaagatttcatgtccattcat
gatttttcattgttatccaactttgcatcaagtaaaggagttttaatatactctgatgat
aagcagagaacaatggtggttacaaagaaaggacatccagccattaagcttttctggaag
gaagcacaagcaaaataa
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