KEGG   Panulirus ornatus (ornate spiny lobster): 139766566
Entry
139766566         CDS       T10834                                 
Name
(RefSeq) exosome complex exonuclease RRP42-like
  KO
K12589  exosome complex component RRP42
Organism
porn  Panulirus ornatus (ornate spiny lobster)
Pathway
porn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:porn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    139766566
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:porn03019]
    139766566
Messenger RNA biogenesis [BR:porn03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     139766566
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     139766566
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 139766566
NCBI-ProteinID: XP_071551479
LinkDB
Position
58:complement(15753373..15764241)
AA seq 290 aa
MVDINLSDAEKRYIVDGVKLGIRVDGRDRLDYRQLEIETDLVSTANGSARVRLDRTDVLI
TVKMEMEPPPPEQPNNGQLHFFVNCSANAAPEFEGRGGADLATSLSAMLERVYSSPHTLN
TSKLCVVPGKHVKVLYVDIEILECGGNLFDAVSLGVKAALWATKMPRIYITGEDGGELEF
SVSDNPCDVDRIDVSNAPILITHLRITENLTVVDPTPEEECCGPVQVVVGVTPQGLITAT
QQFGAGTFTPQTLNASLKSARDLGVKIHQRIMEMLRQEEKIVDRQIKGFL
NT seq 873 nt   +upstreamnt  +downstreamnt
atggtagacataaacctaagtgatgcagaaaaaagatatatcgttgatggagtaaagctc
ggtattcgtgtggatggtagagatcgattggattaccggcagctggagatagaaactgat
ttagtttctacagctaatggttcagctcgagttaggcttgaccgtacagatgtcttgatt
acagtcaaaatggagatggagccaccaccaccagagcaacccaacaatggacaactccac
ttctttgtcaattgttctgccaatgctgcaccagagtttgaaggtcgtggaggtgcggac
ttagctactagcttgagtgcaatgttggaaagggtatactcttctcctcataccctgaac
acttctaagctttgtgttgttcctggcaaacatgttaaggtcctatatgttgatattgag
atcctggaatgtggaggaaatttgtttgatgcagtgagcttgggtgtaaaagcagctctc
tgggcaaccaaaatgccaaggatttatatcactggagaagatggtggagagctggagttt
tcagtgtctgataacccgtgtgatgttgacaggattgatgtctccaatgcacctattcta
ataactcacttaagaataacagaaaatttgactgttgttgatccaactcctgaagaggaa
tgctgtggccctgtacaagtagtggttggcgttactccccagggcttaattactgcaact
cagcagtttggcgcagggacatttacccctcagacattgaatgcttccttaaagagtgca
cgagaccttggagttaagatccatcaacggataatggaaatgttacgacaggaggagaaa
attgtggacaggcagataaaagggtttctttag

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