Panulirus ornatus (ornate spiny lobster): 139766931
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Entry
139766931 CDS
T10834
Symbol
Upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03013
Nucleocytoplasmic transport
porn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139766931 (Upf2)
03015 mRNA surveillance pathway
139766931 (Upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
porn03019
]
139766931 (Upf2)
Messenger RNA biogenesis [BR:
porn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
139766931 (Upf2)
mRNA cycle factors
P-body specific factors
139766931 (Upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
139766931
NCBI-ProteinID:
XP_071552083
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All DBs
Position
58:10892858..10933302
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AA seq
1272 aa
AA seq
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MEGGKGERRGGKSWRKEREEREKKRINNKGAASSTKDPDEKREDPVKEHEVLEYQKQEEE
ARKKAEEDKKQKDEAEVAAAQAKQEEEEEMRKREDEEIKRREEEVMKKLEEDRTFLASYI
QEAEVRLSRKAELRVQNLAMAKDRPELNTAMLDSSLKKNTAFIKKLKNLTESQHDSLVRD
LQSLNLTKYVSEVAQAVVEAKLKMSDISTAVHLCSLLHQRYHDFASALLENWQKVLSPKK
EEKVCKNTNMSKLRVDLRLYAELITAGIFAPKEGLPLLGNVLTTLVTSDKEEHQNIAVLL
TFCRHCGEDYMGLVPRKIRLLSDQFEMSVPKSEFLPRERQKNVRQLLKDYFTSLVKHLFH
DHKELQQVEQQNRRLLQTRGELGQDRVNLSENLAAGLGKLLANAQQMAELLDEDMPELPE
DKTQGDDLGLCDIGMGEGGEIPEGGTAILWEDDDTRAFYENLPELKALIPSILYSDSEKP
TAVPAEETPTEVVDETLEEEELEVMETTEEDPEEVLPPELPPEEEQDDSLTGSGPSSNKV
LLDAFVNALPNCINRDLIDSAAMEFCLRLNTKPSRKKLVRALFLVPRTRLDLLPFYSRLV
ATLQPLMPDLATDLVNMLRQDFKYQVRKKDQINIESKIKVVRFIGELVKFRVFPRSEALL
CLRMLLQDFNHHHIEMACNLLETCGRFLYRIPDSHHRTKIYLEQMMRKKTVKAFDPRYNT
MIENAYFYVNPPDTGPDSAKKERPPMHQYIRKLLYNDLCKSNTEKILRQMRKMHWEDSAI
AGYIVKCLTAVWNAKFYNIRCIANLVAGLISHHDWVGPAVVDGILEDIRLGLEVNHPKYN
QRRVAAVKYLGELYNYRVIESTIIFKVLYLLISFGVVFDPSVFSEYDPPEHLFRIRLVCT
LLETCGQFFSSGSSKRRLDCFLIYFQHYYLYKKNLNIWNEEHEFPWQIEHLVKDTISAVR
PKLQLTVTLEDAQKAVQHLNNQIVAKAIEQVPSLRQYLEPEEDNEGLHTIDEEAGDNQVL
ELEGDMLEDMEDEEEYEEMEGELDWSESHGDSLTPSQHSQPGRSAMEEEGEGVLTGDGEE
EIGDDDGELLDGEILEGDMKVNVKHVDCEEDTDFMSAFDRMMAESIMERASTVPRPGQLD
ISVPVHVKSTAKKTYDQLLCEGTEEENKPVVNFVLMTRSGNKQQYNSVEMPVDSELVTKL
RTREEAERAEKEKVKRMTLEINERQEEEEAAEIMQQAQRPPTMNFNRDRRPKYQHPKGAP
DADLIFGPKKIR
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtgggaagggtgagaggcgcggtggaaagagctggaggaaggagcgtgaggaa
cgagagaagaaacggatcaataacaaaggtgcagcgtcttccaccaaagatcctgacgag
aagagagaggaccctgtgaaggagcatgaagttctggagtaccagaaacaggaagaagag
gccaggaaaaaagcagaagaagataagaaacaaaaggatgaagcagaagtagcagcagct
caagccaagcaggaagaggaggaggaaatgagaaagcgtgaggacgaggaaataaaaagg
cgggaagaggaagtaatgaagaaattggaagaggaccgtactttccttgcatcatatatc
caggaggctgaagtgcgattgtcgaggaaggcagaacttcgagtgcagaacttagccatg
gcaaaagatcgacctgagctcaatacagcaatgttggattccagtttgaagaagaacaca
gcttttattaagaaactaaaaaacttgactgagagccagcatgattctttggtaagagat
ctacagagcctcaacctgaccaagtatgttagtgaagtagcccaggcagtagttgaggcc
aaactgaagatgtcagacatctccacagctgttcatttatgttctctacttcaccagagg
taccatgattttgcttcagcattgttagagaactggcagaaggttctctctccaaaaaag
gaagagaaggtatgtaagaacacaaacatgagtaagcttcgagtggatctgcgtctgtat
gctgaactcataactgctgggatttttgcaccaaaggaaggtcttccccttttaggtaat
gtgttaacaacactggtgacatcagacaaggaagaacatcaaaatattgcagtattactt
accttctgtcgtcactgtggtgaagattatatggggctggtgccacggaaaataagactc
ctttcagatcaatttgagatgtctgttcccaaaagtgagtttcttccacgagagagacag
aagaatgtgagacagctgcttaaagactatttcacttccctcgttaaacacctgtttcat
gatcataaggaactacaacaagtggagcaacagaaccgtcggctgttacagacccgtggt
gagcttggtcaagatcgtgtgaacttgtctgagaaccttgctgctggactaggaaaactt
ctggctaatgctcagcaaatggctgaattgctagatgaagatatgcctgagctgcctgaa
gataaaactcaaggtgatgatctaggcctctgtgatattggaatgggtgaaggtggagag
attcctgaaggagggacagctattctgtgggaagatgatgacaccagggcattttatgaa
aatttaccagagctcaaggcactcattccttctatattatacagcgattctgagaaacca
acagccgttcctgcagaagaaactccaacagaagtagtggatgaaactctggaggaagaa
gaactggaagttatggaaacaacagaagaggacccagaggaagtattaccacctgaacta
ccaccagaggaagaacaagatgacagcttaactggctcaggaccatcttcaaataaagtg
ttactagatgcctttgttaatgctctacctaattgcattaaccgagatttgattgacagt
gctgccatggaattttgtcttagactaaacactaagcccagcaggaaaaaattagtcaga
gcgttgtttttggtgccaaggacaagattggatttacttccgttttattcacggcttgtg
gccaccctgcagcctctcatgccagatctggcaactgatttagtgaacatgctgcgacaa
gactttaagtatcaagtccgaaaaaaagatcaaataaacatagagtccaaaatcaaagtt
gtacggttcattggagagttagtcaagtttcgtgtcttcccccgtagtgaagctctgctg
tgcttacgaatgctacttcaagacttcaatcatcaccatattgaaatggcctgcaacctc
ttggaaacatgtggacgattcctctatagaattccagattctcaccaccgcacaaagatt
tacctcgagcagatgatgagaaagaagacagtgaaggcctttgatccaaggtacaatact
atgattgaaaacgcgtacttttatgtgaaccctccggatactggcccagactcagccaaa
aaagagcgtccaccaatgcaccaatatatacgtaaacttctttacaatgacctttgtaag
tccaatacagagaaaattttaagacagatgcggaagatgcattgggaagattcagctatt
gctggctacattgtgaagtgtctgactgctgtttggaatgccaagttttacaatatacgt
tgtattgcaaatcttgtagcaggactcatctcacatcatgactgggtgggtccagctgtt
gtggatggtattttggaagatatacgtcttgggttagaggtgaaccatcccaagtacaat
cagaggcgtgtagctgctgttaaatacttaggagagctgtataattaccgtgtaattgaa
agcacaatcatttttaaggtcctgtatttgttaatttcatttggggtggtttttgacccc
agtgtgtttagtgaatatgaccccccagagcacctgttccgtatacgtttggtatgcaca
cttctggaaacttgtggacagttcttcagttcaggttccagcaagcgtcgtcttgattgc
tttcttatctatttccaacactattacctgtataagaaaaatttgaatatatggaatgag
gagcatgaattcccttggcaaattgagcatctggtcaaggataccatctcagcagtcagg
cccaaactacaactcactgtcactttagaagatgctcagaaggctgttcagcatcttaat
aatcaaattgtggccaaagcaatagaacaagtccccagcttacggcagtatcttgagcct
gaggaagacaatgaaggtctccacaccatagacgaagaagctggtgacaatcaagttttg
gaattagagggagatatgttggaagatatggaggatgaagaagaatatgaagagatggaa
ggagagttagactggagtgaatcacatggagattccctcactccttcccagcacagtcaa
cctggtcgcagtgccatggaggaggaaggtgaaggagtactgacaggagatggagaagaa
gaaattggagatgatgatggagaattgctggatggagaaatattagagggagacatgaaa
gtcaatgtcaaacatgttgactgtgaagaagacacagattttatgtcagcatttgaccgt
atgatggcagaaagcattatggagcgtgccagtactgtcccacgacctggccagctggat
atatctgtgcctgtgcatgttaagtccactgctaagaagacatatgatcaactgctgtgt
gagggtactgaagaagaaaacaaacctgtggtaaactttgtcctaatgacacgctctggc
aacaaacaacagtacaatagtgtggagatgcctgttgactcagaactggtaacaaagctc
cgaacccgggaagaggcagaaagagctgagaaagaaaaggttaaacgcatgaccctagaa
ataaatgaacgtcaagaagaggaggaggctgctgaaattatgcaacaggcacaacggcca
ccgaccatgaacttcaaccgtgatagacggccaaaatatcaacacccgaaaggtgcccca
gatgcagatcttatttttggacctaagaagataagatga
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