Panulirus ornatus (ornate spiny lobster): 139767449
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Entry
139767449 CDS
T10834
Symbol
Gnf1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
porn Panulirus ornatus (ornate spiny lobster)
Pathway
porn03030
DNA replication
porn03410
Base excision repair
porn03420
Nucleotide excision repair
porn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
porn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
139767449 (Gnf1)
03410 Base excision repair
139767449 (Gnf1)
03420 Nucleotide excision repair
139767449 (Gnf1)
03430 Mismatch repair
139767449 (Gnf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
porn03032
]
139767449 (Gnf1)
03400 DNA repair and recombination proteins [BR:
porn03400
]
139767449 (Gnf1)
DNA replication proteins [BR:
porn03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
139767449 (Gnf1)
DNA repair and recombination proteins [BR:
porn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
139767449 (Gnf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
CTD
AAA_22
PTCB-BRCT
RuvB_N
AAA_16
Rad17
AAA_14
BRCT_2
nSTAND3
AAA_33
AAA_18
AAA_17
AAA_5
AAA_7
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
139767449
NCBI-ProteinID:
XP_071552942
LinkDB
All DBs
Position
61:4584415..4628388
Genome browser
AA seq
1218 aa
AA seq
DB search
MDIRKYFHPLNSKTSGKPSSTAKESKKNYVIIDSDEEDPLPPVRKKHKIVDSEDSDDDIF
TSKPKKKAKTEEKRKPKALSKPAAPKLKPTSPSSFFGKAPVSRSERESVPSKKKKFQSDE
IEILEDHSDNEFQNTLQQLDQEQQHTSKKLRLETKSPSHEERCKTPSHEEKYKTPSHEEK
CKTPSHDERCKTPSHEEKYKTPSHDEKYKTPSYEGKCKTLSHDERCKTPSHEEKYKTPSH
QEKCKTPSHEEKCKTPSHDEKCKAPSHKEKYKTPSYDDEKPKPNENSPPNKNPVQSTVSS
KLSSKLKAFQYNKGTDGENRNHYRDGREDRGKETVQSLGTLKQKISEKDVKTEGKKYIES
PSKEVKSFKKEEKITKKEKQRKEERVIKKEKRILDENIKTESVSLMKHFPDAIIEAAVKV
EKKVTPEKTNTSKITTEADITPQDEKKKHSREAYFKFLRRSGPANPGSKEIPEGAPNCLQ
NLVFVLSGVYDSLDREEAAELIKKYGGKVTSSVSRNTSYLVLGSEAGESKLRKAEQLGTK
QLDEDGLLDLIRTQPGKETKQENTKGKSSDKLKTFAKADSVVKSTLDSQGCKIPSTQVPP
ISSSSISKTPSPKKYLSQSSLSESQETGSPSSTTSSPRTQSISSQELANRPCETLMWVDK
YKPSSIKNIIGQQGDRSNVRKLLNWMQNWYKNQFGDKKPPRPSPWAKDDNGAFFKAALLS
GPPGVGKTTTAHLVCNELGFDFVELNASDSRSKRSLDTVVSELLSNKSLSHYVTSKGEAN
PSSKHALVMDEVDGMSGNEDRGGVQELIALIKKSKVPIIAMCNDRNHPKIRSLANYCFDL
RFSKPRIEQIRGPMMSICFREGIKIKPDALDQVIIGANHDVRQILHHLSVWSSNQQTLNV
DDMKTEAERAKKDLKKGPWDVCKAVFSESELKKMSIHDKSGLFFHDYSIAPLFVQENYPK
VVPHIAKGNRRITLEQLAKTASSLADGDLIEKTIRSSNAWSLLPTQAMFSSVFPGEYMCG
HLAAQIEFPRWLGNNSRRNKFDRLMQELQMHMRVKISGSKLDVGMDYCKSVRNSITTPLA
EQGVDGVHEAVKVMNSYDLLREDMEALLELSQWPGMKDPMSKVESKVKAAFTRTYNKESH
LSPFAAPTVTKKKKRGAGEEDDDEEEEEEDEEEDITASAMIKVKKGNTKDREAGSSKGRG
QQGNSSSKGKGGRGRGIK
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atggatatacggaaatattttcatccacttaatagtaaaacttcaggaaagccttcaagt
acagcaaaggaaagtaagaaaaactatgtaattattgactccgacgaggaggatccactt
cctccagtcaggaagaaacataaaattgtagactcggaagattctgatgatgatatattt
acaagcaaacccaagaaaaaagcaaagactgaagagaaaagaaagcccaaagccctgtca
aagccggctgcaccgaaattgaagcctacgtctccttcatccttctttgggaaggctcca
gtgtccaggagtgaacgagagagtgtcccatcaaagaagaagaagtttcagagtgatgag
attgagattttagaggaccacagtgataatgagtttcagaatacccttcagcagttagat
caagagcaacagcacacatccaagaaacttcgacttgaaactaaatctccttcgcatgag
gagagatgtaaaactccatcgcatgaggagaaatataaaaccccatcacatgaggagaaa
tgtaaaaccccatcgcatgatgagagatgtaaaactccatcacatgaggagaaatataaa
accccatcgcatgatgagaaatataaaaccccatcatatgaggggaaatgtaaaacccta
tcgcatgatgagagatgtaaaactccatcacatgaggagaaatataaaaccccatcacat
caggagaaatgtaaaaccccatcacatgaggagaaatgtaaaaccccatcacatgatgag
aaatgtaaagccccttcacacaaggagaaatataaaactccatcatatgatgatgagaaa
ccaaagcctaatgaaaatagtcctccaaataaaaatcctgtacaatccacagtatctagt
aaattatcctcaaagttaaaggcatttcaatataacaaaggaacagatggagaaaacaga
aaccattacagagatgggagagaagacaggggcaaagagacagtgcagagccttggcacc
ttaaagcaaaaaataagtgagaaagatgtgaaaacagaagggaagaaatatatagaaagt
ccgagtaaggaagtaaaatcatttaagaaagaagaaaaaatcactaagaaagaaaaacaa
cgtaaagaagaaagagtgattaaaaaagaaaaacggatattggatgaaaatataaagaca
gaaagtgtaagtctaatgaaacatttcccagatgctattatagaggcagccgtaaaagtt
gaaaagaaggttacaccagagaaaactaacactagcaagattactactgaagcagacatc
actccccaggatgagaagaagaaacattcgagggaagcttatttcaaatttcttcgtaga
tcaggaccagccaaccctgggagcaaagaaatccctgagggtgcacctaattgtttacaa
aaccttgtgtttgtcttaagtggtgtatatgatagtttagaccgggaagaagcagccgaa
cttataaaaaagtatgggggtaaagttacatcctctgtaagtcgcaacacatcgtacctt
gtgctaggttccgaagctggtgagagtaaattaaggaaggctgaacagttgggtacaaaa
cagttggatgaagatggattattggatctcatacgcacacaacctgggaaggaaacaaaa
caggaaaatacgaaaggaaaatcctcggacaaactcaagacctttgcgaaggcagactca
gtggtgaaatcaacattggacagtcaaggatgcaagattccttccactcaagtcccaccc
atttcatccagcagcatatccaaaactcctagtccaaagaagtacctctcgcagtcaagt
ttatctgagtcacaggaaactggaagcccctcatccacaacctcctctcccagaactcag
tccatctcctcacaagaactcgctaaccgaccgtgtgaaaccctcatgtgggttgataag
tacaaaccatcatcaataaagaatataataggacagcagggagatcgctctaatgtgagg
aagttgctcaactggatgcaaaattggtataagaaccaatttggtgacaaaaaaccacct
aggcctagtccatgggcaaaggatgacaatggagcattctttaaggctgcattactatct
ggacctcctggagtaggaaaaacaacaacagctcatttggtgtgcaatgagctaggcttt
gattttgtggagctgaatgcatcagattcacgttcaaagcgatccttggatacggttgta
tcagaattactttctaataagagcctttcacattatgtgacaagtaaaggggaggcaaac
cctagttccaaacatgcccttgtcatggatgaagtggatggaatgtcaggcaatgaagat
cgaggaggagtccaagaattgattgcactcattaaaaaatctaaagtgcctattattgct
atgtgtaatgacagaaatcatccaaaaataagatcattagccaattattgctttgatctt
aggttttccaagccaaggattgaacagattagggggccaatgatgtcaatatgcttccgt
gaaggtattaaaatcaaacctgatgcgctagaccaggtaattattggagccaatcatgat
gtacgtcagattctccatcacttatcggtttggtcctccaatcagcagacgctaaatgtt
gatgatatgaaaactgaagcagagagagccaaaaaagacttgaagaagggtccatgggat
gtttgtaaggcagttttctctgagtccgaactcaagaagatgagcattcatgataaatcg
ggtttgttcttccatgattactccattgcaccactctttgttcaagagaattatccaaaa
gttgttcctcatattgccaaaggtaatcgacgcatcactctagagcagctagctaaaaca
gcttccagtcttgctgatggagaccttattgagaaaaccattagatcttccaatgcatgg
tcgctccttcctacacaggccatgtttagcagtgtgtttcctggtgaatacatgtgtgga
caccttgctgcacagatagagtttccacgatggctgggcaacaacagtcgtcgcaacaaa
tttgatcgcttgatgcaagagcttcagatgcacatgagagtcaaaatctcaggaagtaaa
ctggatgttggcatggactattgtaagtcagtacgaaattcgataacaactcctttggct
gaacaaggagtagatggtgttcatgaagcggtaaaagttatgaattcatatgaccttttg
cgtgaagatatggaagctttgctagagttatcccagtggccaggcatgaaggatcccatg
agtaaagtcgagagcaaggtaaaagccgcttttactcgtacgtacaacaaagagagtcac
ttaagtccttttgctgcaccaaccgttactaaaaagaaaaagagaggtgcaggcgaagaa
gatgatgatgaggaggaggaggaggaagatgaggaagaggacatcacagcaagtgcaatg
attaaggtaaagaagggtaacacaaaggatagagaagcaggaagcagtaaaggacgaggc
cagcagggaaacagcagcagcaaagggaaaggaggtagaggaagaggcattaaatag
DBGET
integrated database retrieval system
