Porphyromonas sp. oral taxon 275: J4862_00325
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Entry
J4862_00325 CDS
T08761
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
porp
Porphyromonas sp. oral taxon 275
Pathway
porp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
porp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4862_00325 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
porp03019
]
J4862_00325 (rny)
Messenger RNA biogenesis [BR:
porp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J4862_00325 (rny)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
OXR1_M
KH_NusA_2nd
KxDL
Motif
Other DBs
NCBI-ProteinID:
QUB43858
LinkDB
All DBs
Position
80630..82198
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AA seq
522 aa
AA seq
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MLLVILAALAWMLLVYIPRQREHAKAQAAGILSEAEREAEVLKQKKLLEVKEKFLQLKGE
LEQQVAQRNEKLKQIENKLKGREQSLNQRQSDLEKRNSEIDVLKEKLALQSEGIELKKEE
YEVKKVEYEQKKQELEELRRSEQQRLEQLGGLSAGEARERLIESLRAEAKDQAQVYINEI
VEEAKMTASKEAKKIVIQSIQRVATETAIENSVTVFHIDSDEIKGRIIGREGRNIRALEA
ATGIEIIVDDTPEAIVLSSFDPVRREVARLALHQLVQDGRIHPARIEEVVSKVRKQIEEE
IIETGKRTVIDLGIHGMHPELIRLIGKMKYRSSYGQNLLQHSRETANLCAVMASELGLNP
KHAKRAGLLHDIGKVPDDEPELPHALLGMKLCEKYKEKLNICNAVGAHHDEVEMESLIAP
IVQVCDAISGARPGARREIVEAYIKRLNDLETLAASYPGVVKTYAIQAGRELRVIVGAEN
TDDSTIATLSEEIARRIQDEMTYPGQVKITVIRETRSVSYAK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
ctgctcctggtcatcctagccgcgctggcctggatgctcctcgtctacatccctcgccag
cgcgagcatgccaaggcccaggccgcaggcatcctctccgaggccgagcgtgaagccgag
gtgctcaagcagaagaagctccttgaggtcaaggagaagttcctccagctcaagggcgag
ctggagcagcaggtggcacagcgtaacgagaagctcaagcagatcgagaacaagctcaag
ggtcgcgagcagtcgctcaaccagcgtcagtccgacctggagaagcgcaacagcgagatc
gacgtcctcaaggagaagctcgccctacagagtgagggcatcgagctcaagaaggaggag
tacgaggtcaagaaggtcgagtacgagcagaagaagcaggagctcgaggagctccgccgc
agcgagcagcagcgcctcgagcagctcggcggcctctccgcaggcgaggcccgtgagcgc
ctcatcgagagcctgcgcgccgaggccaaggaccaggcacaggtctacatcaatgagatc
gtcgaggaggctaagatgacggccagcaaggaggctaagaagatcgtcatccagtccatc
cagcgcgtcgctaccgagacggcgatcgagaactccgtcaccgtcttccacatcgacagc
gacgagatcaagggccgcatcatcgggcgcgaagggcgcaacatccgtgctctggaggcc
gccacgggtatagagatcatcgtcgacgatacgcccgaggctatcgtcctctctagcttc
gaccccgtacgccgcgaggtagcgcgtctggcgctgcaccagctcgtgcaggacggccgt
atccaccccgcccgcatcgaggaggtcgtctccaaggtgcgcaagcagatcgaggaggag
atcatcgagacggggaagcgtaccgtcatcgacctcgggatccatggcatgcaccccgag
cttattcgcctcatcggtaagatgaagtaccgctcctcctacgggcagaacctcctacag
cactcccgtgaaacggccaacctctgtgccgtcatggcctccgagctgggactcaacccc
aagcacgccaagcgcgctggcctcctccacgatataggtaaggtgcccgacgacgagccc
gagctgccacacgccctcctcgggatgaagctctgtgagaagtacaaggagaagctcaac
atctgcaatgccgtcggcgcccaccacgacgaggtcgagatggagagccttatcgctccc
atcgtacaggtctgtgacgccatcagcggcgcccgtcccggtgctcgccgtgagatcgta
gaggcctacatcaagcgtctcaatgacctcgagacccttgccgcctcttaccccggcgtc
gtcaagacctacgccatccaggcagggcgcgagctgcgcgtcatcgtcggggcagagaac
accgatgatagcaccatcgcgacactctccgaggagatcgctcgccgcatccaggacgag
atgacctaccccggtcaggtcaagatcaccgtcatccgcgagacccgcagcgtcagctac
gccaagtag
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integrated database retrieval system
