Porphyromonas sp. oral taxon 275: J4862_00870
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Entry
J4862_00870 CDS
T08761
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
porp
Porphyromonas sp. oral taxon 275
Pathway
porp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
porp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4862_00870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
porp03019
]
J4862_00870
03400 DNA repair and recombination proteins [BR:
porp03400
]
J4862_00870
Enzymes [BR:
porp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J4862_00870
Messenger RNA biogenesis [BR:
porp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J4862_00870
DNA repair and recombination proteins [BR:
porp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J4862_00870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QUB43211
LinkDB
All DBs
Position
225996..228071
Genome browser
AA seq
691 aa
AA seq
DB search
MAEDPTLLDELLDTEGLAESLEPAERLLWPAELFDQLVELPPTPILRHDPRPGVPDSELT
SVEVLQRYWGYEHFRPLQQEIVEAVLAGRDTLGLMPTGGGKSITFQVPGLMLPGLTLVVT
PLISLMKDQVDRLRAQGIRAAAIHSGMGPEQMQHTLDNCLWGGYKFLYISPERLASASFL
SWLQEARISLLAVDECHCISQWGYDFRPSYLNILELRRLYPELPILALTATATEETIGEI
LGVLDFRPGYALLRKSFLRPQLSYSIRRCEDKSAMMLHILRRVPGPAILYCRNRELTRQL
AEELDAAGISATYYHAGLSYKDRELRQARWMRGEVRVMVATNAFGMGIDKPDVRLVLHLT
MPSSLEEYFQEAGRAGRDGERAYAVAIVSRRDSQLLQRRLEDSFPPKDYIRHCYDQLCNY
LEIGEGEGLGRSYSVDVEHFIRLFHMRPVQTYHALEIMQLARWLRYEEDGGRSRLMFLIP
SSQLYQPHIGPDKLIRAILRSYTGLFSSYVSIYEPDLAEATGYTVEEIYEHLARLGRIGV
LHYIPQRQVPRVTFLVRREESRLLQIAPEAYEERRRRMADRIACVRSYIEAEETCRSRML
LAYFGEEEAVPCGCCDVCLTRHSSGLHQYVIDACREALERLFLATERPSLPVAELVASLP
YPELEVYEALRYWAAELDGLVLDGAHLRREV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggccgaggatcctacgctgctggacgagctgctcgataccgagggcctagccgagagc
ttggagccagccgagcggctgctttggcccgccgagctcttcgatcagctcgtagagctt
ccgcccactcctatcctacgacatgacccccgcccaggagtacccgacagcgagctcacg
agcgtcgaggtactgcagcgctattggggctacgagcacttccgcccgctgcagcaggag
atcgtggaggcggtgctggcagggcgtgatacccttgggctgatgcctacaggcggcggc
aagagcattaccttccaggtgccggggctgatgctgccgggtctgacgctcgtcgtcacg
ccgctcatctccctcatgaaggaccaggtagaccgcctgcgcgcgcagggcatacgtgcc
gccgccatccactcgggcatgggccccgagcagatgcagcacacgctggacaactgtctg
tggggagggtacaagttcctctacatctcccctgagcgtctggcgtcggccagcttcctc
tcgtggctgcaggaggcgcgcatctcgctgctggccgtcgacgagtgtcactgcatcagc
cagtggggctatgacttccgtccctcctatctcaatatcctcgagctcaggcgcctctat
cccgagctgcccatcctagccctcaccgctaccgctaccgaggagacgataggggagatc
ctcggcgtgctggacttccgccctggctatgcgctcctccgcaagagcttcctccgcccc
cagctctcctactccatacgccgctgcgaggataagtccgccatgatgctgcatatcctc
agacgtgtccccggtcccgccatcctctactgccgcaatagggagctgacgcgccagctg
gccgaggagctcgatgctgcgggtatcagcgccacctactaccatgcggggctcagctat
aaggatagggagctacgccaagcgcgctggatgcggggcgaggtgcgcgtcatggtcgcg
accaatgccttcggtatgggcattgataagcccgacgtgcgtctggtgctgcatctcacc
atgccctcctcgctggaggaatacttccaggaggcaggccgtgcggggcgtgatggcgag
cgcgcctatgccgtggcgatcgtctccaggcgcgacagccagctgctgcagcgccgtctc
gaggacagcttcccccccaaggactacatccgccactgctatgaccagctgtgcaactat
ctcgagatcggcgagggcgaagggctgggacgcagctatagcgtggatgtggagcacttc
atccgcctcttccacatgcgccccgtgcagacctaccacgcactggagatcatgcagctg
gcacgctggctacgctacgaggaggatgggggacgctcgcgcctgatgttcctcatcccc
agcagccagctctaccagccgcatatcggccccgacaagctcatccgtgccatcctgcgc
agctatacggggctcttctccagctacgtcagtatctacgagcctgacctggcggaggct
acgggctatacggtggaggagatctacgagcatctagcgcgcctggggcgcatcggggtg
ctgcactatatcccccagcggcaggtgccacgtgtcaccttcctcgtgcggcgtgaggag
tcgcgcctcttgcagatcgcccccgaggcctatgaggagcgccgccgccgtatggccgac
cgtatcgcctgcgtgcgcagctatatcgaggcggaggaaacctgccgctcgcgtatgctg
ctggcttacttcggtgaggaggaggctgtgccctgcggctgctgcgacgtctgcctcacc
cgccattcctcggggctgcatcagtatgtcatcgacgcctgccgtgaggcgctggagcgg
ctcttcctcgccacggagcgccccagcctccccgtcgcggagctcgtggcgagcctgcct
taccccgagctggaggtctacgaggccctacgctactgggcggctgagctggacggcctt
gtcctcgatggcgcgcacctgagacgtgaggtctag
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