Porphyromonas sp. oral taxon 275: J4862_03125
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Entry
J4862_03125 CDS
T08761
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
porp
Porphyromonas sp. oral taxon 275
Pathway
porp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
porp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J4862_03125 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
porp03400
]
J4862_03125 (uvrA)
DNA repair and recombination proteins [BR:
porp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J4862_03125 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J4862_03125 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
RsgA_GTPase
DnaJ_CXXCXGXG
nSTAND1
AAA_16
AAA_21
AAA_25
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
QUB43625
LinkDB
All DBs
Position
773066..775900
Genome browser
AA seq
944 aa
AA seq
DB search
MQDLEIRGARVHNLKNIDAHIPRYSLTVFTGLSGSGKSSLAFDTIYAEGQRRYIETFSSY
ARGFLGGGMERPDVEQIDGLGPVISIEQKTTNRNPRSTVGTVTEIYDFFRLLYARAGEAR
SYLTGRPMVRYTEEQILELLLERYEGKRVLLLAPVVKQRKGHYKELFEQLRKKSYLTVRV
DGELRELTYGMKLDRYKIHSVEVQTDKLTISAKNKDRLLASLRLTLREGDGVMMVQELEH
NTIAYYSRHLMDPETGLSYSEPAPHNFSFNSPNGACPRCKGMGEIRVIDPASIIPDPSKS
IYQGGIIPLGKYKRNLVFAQIEALCERYELSLKTPIKSLPEDLLTEILEGSSEPITLADE
RMPELKGIPLSYDGLGAYLMSQVEEVESSRESERWMSQFTKGEVCPECHGGRLNQEALHY
YIGDKNLGEVGMMELTQLTAWIDEVVKELSESQRQIATEVLKEIRTRLSFLLDVGLGYLS
MNRVSSTLSGGESQRIRLATQIGTQLVEVLYILDEPSIGLHQRDNLRLIHSLQKLRDLGN
TVIVVEHDKDMMLEADHIIDMGPRAGRLGGEVVFMGSPADMMKTETLTARYLRGEEEVDV
EQHKPISSEKLLLKGARGNNLKGIDVSFPLGNLICVAGVSGSGKSTLINDTLYPILSQRL
YGSLQEPLAYDSIEGLELVDKVVAVDQAPIGRTPRSNPATYTGVFTDIRNLFVGLPESKM
RGYKPGRFSFNVSGGRCETCSGNGYKTIAMNFLPDVYAPCEVCHGRRYNRETLEVRFKGK
SIADVLDMTINAAVEFFAHVPPILKKLQVLQEVGLGYIKLGQSSTTLSGGESQRIKLASE
LSKRDTGRTVYILDEPTTGLHFEDIRVLLGILRRLVDRGNTVIVIEHNLDVLRSADYIIE
IGLDGGRSGGELVFAGSPEELIKRKDSPTAPYLKEEMKGSKKAK
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacttagagatacggggagcgcgcgtgcacaacctcaagaacatagatgcccat
attccccgctattcgctcacggtattcaccgggctgagcggtagtggcaagtcgtccctc
gccttcgatacgatctatgccgagggccagcgccggtacatagagacctttagctcctat
gcccgcggcttcctcgggggcggtatggagcgccccgacgtggagcagatcgatggcctc
gggcccgtgatctccatcgagcagaagacgacgaaccgcaacccgcgctccacggtcggc
accgtgacggagatctacgacttcttccgtctgctctacgcgcgtgctggtgaggcacgc
tcctacctcacggggcgccccatggtgcgctataccgaggagcagatcctagagctgctc
ttggagcgctacgagggcaagcgggtactcctcttggcgcccgtggtcaagcagcgtaag
gggcactacaaggagctcttcgagcagctgcgcaagaagagctacctcaccgtgcgtgtc
gacggcgagctgcgtgagctgacctacgggatgaagctcgaccgctacaagatccatagt
gtagaggtgcagacggataagctgaccatctcggccaagaataaggaccgcctgctggct
agcctgaggctgacgctgcgcgagggggatggcgtgatgatggtgcaggagctcgagcac
aataccatagcctactacagccgtcatctgatggatcccgagacggggctatcctacagc
gaacccgcgccgcacaacttctcctttaattcgcccaacggagcttgccctcgctgcaag
gggatgggggagatccgcgtcatagaccctgccagcatcatccccgacccaagcaagagt
atctatcagggagggatcatcccgctaggtaaatacaagcgcaacctagtctttgcccag
atcgaggcgctgtgcgagcgctacgagcttagcctcaagacgccgatcaagagcctcccc
gaggatctactcaccgagatcctagaggggagttcggagcccatcaccctcgccgacgag
cgtatgcccgagctcaagggcatccccctgagctacgatggtctcggcgcctacctgatg
agtcaagtcgaggaggtcgagagcagtcgtgagagcgagcgctggatgagccagttcacc
aagggcgaggtctgccccgagtgccacggtgggcgactgaatcaagaggctctacattat
tatataggggacaagaacctcggcgaggtagggatgatggagctgacacagctcacggcc
tggatcgacgaggtagtgaaggagctctcggagtcccagcgacagatcgccaccgaggtg
ctcaaggagatacgcacgcgcctctccttcctcctagatgtcgggctgggctacctctcg
atgaaccgcgtgtcctccaccctctcgggcggtgagagccagcgcatacgtctggcgacg
cagatagggacgcagctcgtcgaggtgctctacatcctcgacgagcccagcatcggcctg
caccagcgggacaacctacgcctcatccactccctgcagaagctgcgcgacctcggcaat
accgtcatcgtcgtcgagcacgataaggatatgatgctcgaggccgaccatatcatcgac
atgggaccccgtgcgggacgcctcggcggtgaggtcgtcttcatgggcagccctgctgac
atgatgaagaccgagaccctcacagctcgttatctgcggggtgaggaggaggtagacgtc
gagcagcacaagccgatcagctctgagaagctgctcctcaagggcgcacgcgggaacaac
ctcaagggtatcgacgtcagcttccccctcggtaacctcatctgcgtggctggggtctcg
ggtagcggcaagagtacgctcatcaacgacaccctataccccatcctcagccagaggctc
tacggatcgctgcaggagccccttgcctatgattccatagaggggctggagctcgtcgac
aaggtcgtggcggtggatcaggcgccgatcggacgcacgccgcgcagtaatcccgccacc
tatacgggcgtcttcaccgacatccgcaacctcttcgtagggcttcccgagagtaagatg
cgcggttacaagcctgggcgcttctccttcaacgtctcgggtgggcgctgcgagacctgc
tcggggaacggctacaagaccatagcgatgaacttcctccctgacgtctatgccccctgt
gaggtctgccacggacgccgctacaatagggagacgctcgaggtacgcttcaaggggaag
tccatcgccgacgtcctggatatgacgatcaatgccgccgttgagttcttcgcccacgtg
cctcccatcctcaagaagctacaggtgctgcaggaggtaggcctaggctatatcaagcta
gggcagtcctccacgaccctctcgggtggggagagccagcgcatcaagctcgcctccgag
ctctccaagcgcgatacggggcgcacggtctacatactcgatgagccgaccactggcctg
cacttcgaggacatccgcgtcctgctcggcatcctgcgccgcctggtggatcgaggaaat
acggtcatcgtcatcgagcacaacctcgatgtgctgaggagtgcggactacatcatcgag
atcggcctcgacggggggcggagtgggggagaactcgtctttgcagggagtcccgaggag
ctcatcaagcgcaaggatagccccaccgcgccctacctcaaggaggagatgaagggatcc
aagaaggctaagtag
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integrated database retrieval system
