Porphyromonas sp. oral taxon 275: J4862_03755
Help
Entry
J4862_03755 CDS
T08761
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
porp
Porphyromonas sp. oral taxon 275
Brite
KEGG Orthology (KO) [BR:
porp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
porp03032
]
J4862_03755 (topA)
03400 DNA repair and recombination proteins [BR:
porp03400
]
J4862_03755 (topA)
Enzymes [BR:
porp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
J4862_03755 (topA)
DNA replication proteins [BR:
porp03032
]
Prokaryotic type
DNA Topoisomerases
J4862_03755 (topA)
DNA repair and recombination proteins [BR:
porp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
J4862_03755 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HTH_IclR
RTT107_BRCT_6
Mur_ligase_C
Motif
Other DBs
NCBI-ProteinID:
QUB43743
LinkDB
All DBs
Position
942061..944412
Genome browser
AA seq
783 aa
AA seq
DB search
MNLVIVESPKKAELIQGFLKKHKLNNYKVMASAGHVRDLKSHSFSIDVADNFRPEYVITE
DKKNLVRELKEQAKKADIVYLASDEDREGEAIAWHLKEALELKPEKTKRIVFHEITAEAF
LHALEHPRDIDMHLVDAQQARRVLDRIVGFELSPVLWKRIRPSLSAGRVQSVAVRLIVDR
EREIRSFVAQSSYRVQADFLLPSGQTLHTELNERFASEAEAQALLERCIGAPFQIQSITR
RAGRRSPAAPFTTSTLQQEAAHKLGYSVSQTMRLAQSLYESGYITYMRTDSVNLSQQALA
AIGRQIAQHPGVEYHQPRQYHTRSKGAQEAHEAIRPTYIDRAQIEGSAQEQRLYDLIRKR
TLASQMADAQLERTTVSIPVEGTEHAFVAQGEVITFRGFLDVYMSAGDEEQGKANRILPQ
VAEGEALSLQSLQAEERFTQRPARYTEASMVSKMEELGIGRPSTYAPTIQTIQNRGYVER
GDRPGKERSYTILQLQDGQIKRSTKTEIYGADKGKLLPTDVGIVVNDFLVEQFPNIVDYN
FTARVEEDFDTIAEGGTQWDGVIGDFYTGFHPEVDRAISERSEHRVGQRVLGVDPATGLR
VSVSIGRYGPMAQLGTQEDEAKPRFASLQSGQSLETITLEDALELFKLPKVIGQYEGEDL
LVATGRFGPYVRHAGKFYSLPEGLDPLSCTADQAIKLIQTKRQAEQQSLLRSFDEDPELE
IRTGRFGPYIKYKGSNYKLPKDRDIPSLSYAACLELIQSSGSKPSRKGSSRARSSATTRR
RKS
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgaacctagtcatagtagaatcccccaagaaggccgaactcatccaaggctttctcaag
aagcataagctcaacaactataaggtcatggctagcgcaggtcacgtgcgtgacctcaag
agccattccttcagcatagacgtagcggacaacttccgtcccgagtacgtcatcacggag
gacaagaagaaccttgtgcgcgagctgaaggagcaggccaagaaggccgacatcgtctac
ctcgcctccgatgaagaccgcgagggagaggccatcgcctggcacctcaaggaggcgctg
gagctgaagccagagaagaccaagcgcatcgtcttccacgagatcaccgccgaggccttc
cttcacgccctagagcatccccgcgacatcgacatgcacctagtggacgcgcagcaggcg
cgccgcgtgcttgaccgcatcgtgggcttcgagctctcgcccgtactctggaagcgcatc
cgtccctcgctctccgcagggcgtgtgcagtccgtagccgtgcgcctcatcgtagatcga
gagcgcgagatacgcagcttcgtcgcccagagtagctatcgcgtgcaggccgacttcctc
ctcccctcggggcagaccctacacaccgagctcaatgaacgcttcgccagcgaagccgag
gcccaggcgctgctcgagcgctgcatcggtgcgcccttccagatacagagcatcacccgc
cgtgcaggtcgccgctcccccgccgcacccttcactacctctacgctgcagcaggaggcc
gcgcacaagctcggctactccgtctcgcagaccatgcgcctggcgcagtcgctctacgag
tcgggctacattacttatatgcgtaccgactcggtgaacctctcgcagcaggcgctggcg
gctatcggccgacagatcgcccagcatccaggcgtcgaataccatcagccgcgccagtac
catacccgtagtaagggagcccaggaggcgcacgaggctatccgccccacctacatcgac
cgcgctcagatcgagggcagcgcacaggagcagcgcctctatgacctcatccgcaagcgc
acactagcctcgcagatggccgacgcccagctggagcgcacgaccgtgagtatccccgtc
gaggggacagagcatgccttcgtcgctcagggcgaggtgatcaccttccgaggcttccta
gacgtctatatgagtgccggggatgaggagcagggcaaggccaaccgcatcctcccccag
gtcgccgagggcgaggcactcagcctccagagtctgcaggccgaggagcgcttcacccag
cgccccgcccgctacaccgaggcctccatggtcagcaagatggaggagctaggcataggc
cgcccctcgacctacgccccgacgatacagaccatacagaatagaggctacgtcgagcgc
ggtgaccgccctggtaaggagcgtagctataccattctccagctgcaggacggccagatc
aagcgatcgaccaagaccgagatctacggcgccgacaaaggcaaactcctaccgacagat
gtcggcatcgtcgtcaatgacttcctcgtcgagcagttccccaacatcgtggactacaac
ttcacggcgcgtgtcgaggaggacttcgacaccatcgccgagggaggcacgcagtgggat
ggcgtcatcggagacttctacacgggcttccatcccgaggtggaccgcgctatcagtgag
cgtagcgagcaccgtgtggggcagcgcgtactaggggtagatcccgccacggggctacgt
gtatcggtgagcataggccgctatggccccatggcgcagctcgggacgcaggaggacgag
gccaagcctcgcttcgcctccctccagtcggggcagtccctcgagaccatcacgctggag
gatgcgctggagctcttcaagctacccaaggtcatcggccagtacgagggtgaggacctc
ctcgtcgccacgggacgcttcggtccctatgtacgccacgcagggaagttctacagcctc
cccgagggactggacccgctgagctgcaccgccgaccaagccatcaagctgatccagacc
aagcgtcaggccgagcagcagagcctgctgcgtagcttcgatgaggatcccgagcttgag
atccgcacgggacgcttcggcccctacatcaagtacaagggctcgaactacaagctcccc
aaggacagagatatcccctccctcagctacgcggcttgcctcgagctaatccagagtagc
ggcagcaagcctagccgcaagggctcgagccgtgcacgctccagcgctacgacgagacga
cggaagtcctga
DBGET
integrated database retrieval system
