Porphyromonas sp. oral taxon 275: J4862_03900
Help
Entry
J4862_03900 CDS
T08761
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
porp
Porphyromonas sp. oral taxon 275
Pathway
porp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
porp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4862_03900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
porp03019
]
J4862_03900
03016 Transfer RNA biogenesis [BR:
porp03016
]
J4862_03900
Enzymes [BR:
porp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
J4862_03900
Messenger RNA biogenesis [BR:
porp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
J4862_03900
Transfer RNA biogenesis [BR:
porp03016
]
Prokaryotic type
tRNA degradation factors
J4862_03900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
DUF7071
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
QUB43768
LinkDB
All DBs
Position
complement(981439..983604)
Genome browser
AA seq
721 aa
AA seq
DB search
MLQPISKTIILPDGREIVIETGKLAKQADGAVTLRMGNTVLLATVCAAKDANPGVDFMPL
QVEYKEKYAAFGRFPGGFTRREGKASDYEILTCRLVDRALRPLFPDDYHAEVFVNVILFS
TDGVDMPDALAGLAASAALAVSDIPFNGPISEVRVARVDGELIINPTFEQLERADIELMV
GATLDNIMMVEGEMQEVQEAEMLEAIKAAHEAIKVQCQAQLELSEAVGKLVKRTYCHEEN
DEELRKDVHDSCYSKAYAVAISGTDKHARAEAFEAIVEEYKAKFTEEELETKAPLIARYY
HDVEKEAMRRAILDEGKRLDGRKTTEIRPIWIETDYLPGPHGSAVFTRGETQSLTTVTLG
TKSDEKLVDDVLNYGKERFLLHYNFPPFSTGDARPQRGVGRREIGHGNLAHRALKRMLPK
DYPYVVRVVSDILESNGSSSMATVCAGTLALRDAGVPLAKPVSGIAMGLISENKGTNYAI
LSDILGDEDHLGDMDFKVTGTADGITATQMDIKVDGLSYEILERALAQAREGRLHILGKI
MEAQPETRDDLKPHAPRIVTLRIGKEFIGAVIGPGGKVIQGMQEKSGASISIDEVDGVGV
VEISASNKEAIDTAVALIKGIVAMPEVGEVYQGKISSVMPYGCFVEFLPGKDGLLHISEI
DWKRYETIEETGLEAGQPIEIKLIDVDQKTGKFKLSRRALLEKPEGYKEPERRPRPERRP
R
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgctacagccaattagcaagacaatcatccttcccgatggcagagagatcgtcatcgag
acaggcaagctagccaagcaggctgacggtgctgttaccctacgcatggggaacaccgtc
ctgctagctaccgtatgcgccgccaaggacgccaaccccggggtagacttcatgcccctg
caggtggagtacaaggagaagtacgccgcctttggtcgcttccctggaggcttcacgcgc
cgtgaaggcaaggcttcggactatgagatcctgacctgccgcctcgtcgaccgtgcacta
cgtcccctcttcccagatgactaccatgcagaggtcttcgtcaacgtcatcctcttctct
accgacggggtagatatgccggatgcactggctgggctcgctgcctctgctgcattggct
gtatccgacattcccttcaatggccccatcagtgaggtgcgcgtagcgcgcgttgatggc
gagctcatcatcaaccccaccttcgagcagctagagcgtgccgacatcgagctgatggtc
ggtgctacgctggacaacatcatgatggtcgagggggagatgcaggaggtccaggaggcc
gagatgctcgaggctatcaaggctgcccacgaagccatcaaggtacagtgccaggctcag
ctcgagctcagcgaagcagtaggcaagctcgtcaagcgcacctattgccacgaggagaac
gacgaggagctgcgcaaggacgtccatgactcctgctacagcaaggcctatgctgtcgcc
atctcgggcacggacaagcacgctcgtgctgaggccttcgaagcaatcgtcgaggagtac
aaggctaagtttaccgaagaggaactcgagaccaaggctccgctgatcgctcgctactac
cacgacgtagagaaggaagctatgcgtcgcgctatcctcgatgagggcaagcgtctcgat
ggtcgtaagacgacggagatccgccccatctggatcgagactgactacctcccaggtccc
cacggttcggctgtcttcacccgcggtgagacgcagtcactgacgactgttacgctcggt
accaagagcgatgagaagctcgtcgatgacgtgctcaactacggcaaggagcgcttcctg
ctgcactataacttccctcccttctccacgggtgacgctcgcccacagcgtggtgtaggt
cgtcgtgagatcggtcacgggaacctcgcacaccgcgccctcaagcgcatgctgcccaag
gactacccctacgtcgtacgcgtcgtatcggatatcctcgagtccaatggctcctcctcc
atggctacggtctgcgccggtacgcttgccctgcgtgatgctggggtgcctctggctaag
cccgtatcgggtatcgcgatggggctgatctccgagaataagggtacgaactatgccatc
ctctccgacatcctcggcgatgaggaccacctcggggatatggacttcaaggtaacgggt
acggctgacgggatcaccgccacgcagatggacatcaaggtcgatggcctcagctacgag
atcctcgagcgtgcactggctcaggctcgagagggtcgcctgcacatcctcggtaagatc
atggaggctcagcctgagacccgcgatgacctcaagccccacgctccacgcatcgtcacg
ctgcgcatcggtaaggaattcatcggtgctgtcatcggccctggtggtaaggtcatccag
ggtatgcaggagaagagcggtgcctccatcagcatcgacgaggtcgatggtgtgggcgtc
gtagagatcagcgcctctaacaaggaagctatcgacacggccgtagctctgatcaagggc
atcgtcgctatgcctgaggtaggcgaggtgtatcagggtaagatcagctccgtgatgccc
tatggctgcttcgtcgagttcctccccggtaaggatggtctcctccacatctccgagatc
gactggaagcgctatgagaccatcgaggagacgggccttgaggctggtcagcccatcgag
atcaagctgatcgacgtggaccagaagacgggcaagttcaagctcagtcgccgcgccctc
ctcgagaaacccgagggctacaaggagcccgagcgtcgtcctcgtcccgagcgtcgtcct
cgctag
DBGET
integrated database retrieval system
