Porphyromonas sp. oral taxon 275: J4862_06670
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Entry
J4862_06670 CDS
T08761
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
porp
Porphyromonas sp. oral taxon 275
Pathway
porp03030
DNA replication
porp03430
Mismatch repair
porp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
porp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J4862_06670 (dnaE)
03430 Mismatch repair
J4862_06670 (dnaE)
03440 Homologous recombination
J4862_06670 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
porp03032
]
J4862_06670 (dnaE)
03400 DNA repair and recombination proteins [BR:
porp03400
]
J4862_06670 (dnaE)
Enzymes [BR:
porp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
J4862_06670 (dnaE)
DNA replication proteins [BR:
porp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
J4862_06670 (dnaE)
DNA repair and recombination proteins [BR:
porp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
J4862_06670 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
SSB
DUF719
Motif
Other DBs
NCBI-ProteinID:
QUB42684
LinkDB
All DBs
Position
complement(1684205..1687903)
Genome browser
AA seq
1232 aa
AA seq
DB search
MDNQPFVHLHVHSQFSLLDGQASVKGLVDKAIKDGMSGIALTDHGAMFGIKEFYDYVSKK
NAPLLGERKDLAKQIAAFEEQEARTTEEEARLEELRAQLAAAEARPLFKPILGCEVYCAR
RSRFKKEANVPNPYRPTQSIDNSGWHLVLLAKNLTGYKNLIKMVSRAWIDGYYYRPRIDK
ELLEEYHEGIIVSSACLGGEIPQHILNGNIEEAERSIEWFQGIFGEDFYLELQRHKTTNP
LGNQETYELQQRVNAVLLELGQKHGVKVIATNDIHFLNEEDAEAHDRLICLSTGKDLNDP
KRMRYSKQEWMKTRSEMYELFADVPQVLAATQEICDKVELYSIDHGPLMPDFPIPEGYED
DDDYLRHLTYEGARRKYGEEGLTEEVRERIDFELATIKGMGFPGYFLIVQDFIAAARDMG
VFVGPGRGSAAGSAVAYCLGITDIDPIRYDLLFERFLNPDRISMPDIDVDFDDDGRADVL
RWVTDKYGYERVAHIVTYGTMAAKSAIKDVARVQKLPLNESDRLTKLIPDKIPDKKGVSI
ADSIEYVEELKKASLSPDPLLHDTLKYAQMLEGNIRSTGVHACGIIIGKMDISDVVPLST
AEDKATGESMLVTQYEGSVIESTGLIKMDFLGLKTLSVIKEALLNIKKSRGLEIDIDRIP
IDDAKTYQLYAEGKTVGTFQFESAGMQKYLRELEPSTFEDLIAMNALYRPGPMDYIPDFI
DRKHGRKDITYDLPCMERYLKDTYGITVYQEQVMLLSREIADFTRGQSDELRKAMGKKLA
DKMAALKVKFLDGGTKNGHDKATLEKIWADWAKFASYAFNKSHATCYSWVAYQTAYLKAN
YPAEYMAGALSRNLSNITEIIKLMDECRAMGIKVLSPDVNESDFKFAVNQEGNIRFGLNA
IKGVGSSAVEAIIREREEHGPFSDVYDFFERVPISVINKKTLESLIFAGGFDSFGYQREL
YTAPLESNFRDDNFLSALVRYAQTLQSEQSRNESSLFGEDEEAMQLPRPTPPEHYVELSD
LERLNRERDLVGLYLSGNPLDPYRVLLECYCPVNALELNDLEAVGEGRTVSFGGMVSKVY
NGFTKRGDPYARITIEDTFGSFDLALFSSNYVNFQQYCHKGLFIFVQGTVQRRRYGDELE
LSVSRISLLSEVIDTTMSAVHLEIDVRAVSQEVIEELSQFITNNPGEAMLSIRITDGTGR
HDVQLSYDRNPIKPTPQLLDFCRASGIVMSVR
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atggacaatcagcccttcgtacacctacatgtgcactcccagttctcgcttctcgatggt
caggcctctgtcaaggggctggtagataaggccatcaaggatggcatgagtggcatcgcc
ctgaccgaccacggggcgatgttcggcatcaaggagttctacgactacgtcagcaagaag
aacgccccgctgctcggggagcgcaaggacctcgcgaagcagatcgctgccttcgaggaa
caggaggcacgcacgactgaggaggaggcacgactcgaggagctacgtgcgcagctggcg
gcggccgaggctcggccgctcttcaagcccatcctcggctgcgaggtctactgcgcccgc
cgctctcgcttcaagaaggaggccaacgtccccaacccctatcgccccacccagtccata
gacaacagcggctggcacctcgtcctgctggctaagaacctcaccggctacaagaacctc
atcaagatggtctcccgcgcctggatcgatggctactactaccgcccccgcatcgacaag
gagctgctggaggagtaccatgagggcatcatcgtatcctcagcttgcctcggcggggag
atcccgcagcacatccttaatgggaacatcgaggaggccgagcggagcatcgagtggttt
caggggatcttcggggaggacttctacctggagctgcagcgtcacaagacgaccaacccg
ctgggcaatcaggagacctacgagctgcagcagcgcgtcaatgcggtgctgctagagcta
gggcagaagcacggggtgaaggtcatcgcgaccaacgatatccatttcctcaacgaggag
gatgccgaggcgcacgatcgcctaatctgtctcagcacgggcaaggacctcaatgatccc
aagcgcatgcgctacagcaagcaggagtggatgaagacgcggagcgagatgtacgagctc
ttcgccgacgtcccccaggtgctggcggcgacccaggagatctgcgacaaggtcgagctc
tacagcatcgaccacggccccttgatgcccgacttccccatccccgagggctacgaagac
gatgacgactatctgcgacacctcacctacgagggcgctcggcgcaagtacggcgaggag
ggactgacggaggaggtgcgggagcgcatcgacttcgagctggctacgatcaagggtatg
ggcttccccggctacttcctcatcgtgcaggacttcatcgctgccgctcgcgatatgggc
gtcttcgtaggcccagggcgcggctcggctgcgggctcggccgtggcctactgtctaggc
atcacggatattgacccgatacgctacgacctgctcttcgagcgcttcctcaaccccgac
cgtatctccatgcccgatatcgatgtggacttcgacgacgatggtcgcgccgatgtcctg
cgctgggtcacggataagtacggctatgagcgcgtggcgcatatcgtcacctatggcacg
atggccgccaagagcgccatcaaggacgtggctcgtgtgcagaagctccccctgaacgag
agcgatcgcctcactaagctcatccccgacaagatccccgacaagaagggcgtcagcatc
gccgactccatcgagtacgtcgaggagctcaagaaggcttcgctgagccctgatcccctg
ctacacgatacgctgaagtacgcccagatgctggagggcaacatccgcagcacgggtgtc
cacgcctgcgggattatcatcggcaagatggacatcagcgatgtcgtgcccctcagcacg
gccgaggacaaggctacgggcgagagcatgctggtgacgcagtacgagggctcggtcatc
gagtccacggggctgatcaagatggacttcctggggctgaagacgctctcggtcatcaag
gaggccctgctcaatatcaagaagagccgcggcctagagatcgacatcgaccgcatcccc
atagacgacgctaagacctaccagctctacgccgagggcaagacggtggggaccttccag
ttcgagtccgccggcatgcagaagtacctgcgcgagctggagccctcgaccttcgaggac
ctcatcgcgatgaatgccctctaccgcccggggcctatggactacatccccgacttcatc
gaccgcaagcacggacgcaaggacatcacctatgacctgccctgcatggagcgctacctc
aaggatacctacggcatcaccgtctatcaggagcaggtgatgctcctctcgcgtgagatc
gccgacttcacccgagggcagagcgatgagctccgcaaggcgatggggaagaagctcgcg
gacaagatggccgccctcaaggtgaagttcctcgacggggggaccaagaatggccacgac
aaggcgacgctggagaagatatgggccgactgggccaagttcgcctcctacgccttcaac
aagagtcatgccacctgctacagctgggttgcctaccagacggcctacctcaaggcgaac
tatcccgccgagtacatggctggggcgctgagccgcaatctcagcaacatcaccgagatc
atcaagctgatggacgagtgtcgcgccatgggcatcaaggtgctgagccccgatgtcaat
gagtcagacttcaagttcgccgtcaaccaggagggcaacatccgcttcgggctcaacgcc
atcaagggtgtgggtagctcggccgtcgaggccatcatccgcgagcgggaggagcacggg
cccttcagcgacgtctatgacttcttcgagcgcgtgcctatctcggtgatcaataagaag
acgctcgagagcctcatcttcgcgggcggcttcgatagcttcggctaccagcgcgagctc
tacacggcgcctctggagagcaacttcagggacgacaacttcctctccgccctcgtgcgc
tatgcccagacgctgcagtccgagcagagccgcaatgagtcctcgctcttcggcgaagac
gaggaggccatgcagctaccgcgtcccacaccgcccgagcactatgtagagctgagcgat
ctggagcgcctcaaccgcgagcgcgacctcgtcgggctctacctctcgggcaatccgctg
gacccctaccgtgtgctgctggagtgctactgccccgtcaatgccctcgagctgaacgac
ctcgaggcggtcggcgaagggcgtacggtctccttcggcggtatggtctccaaggtgtac
aacggcttcaccaagcgcggcgacccctatgcgcgtatcacgatcgaggataccttcggc
tcctttgacctagcgctcttcagcagcaactacgtcaacttccagcagtattgccacaag
gggctcttcatcttcgtgcaggggacggtacagcgtcgccgctatggcgacgagctggag
ctctcggtcagtcgcatctccctactctctgaggtcatcgacacgacgatgagcgctgtg
cacctcgagatcgatgtgcgcgccgtcagccaagaggtcattgaggagcttagccagttc
attacgaacaatccaggagaagctatgttatctattcgtatcaccgatgggacgggtcgc
cacgacgtacagctcagctacgaccgcaatcccatcaagccgacgccacagctgctggac
ttctgtcgcgccagtggtatcgtgatgtcggtacgctag
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integrated database retrieval system
