Pseudomonas oryziphila: EJA05_00405
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Entry
EJA05_00405 CDS
T07791
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
pory
Pseudomonas oryziphila
Pathway
pory03030
DNA replication
pory03410
Base excision repair
pory03420
Nucleotide excision repair
pory03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pory00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EJA05_00405 (polA)
03410 Base excision repair
EJA05_00405 (polA)
03420 Nucleotide excision repair
EJA05_00405 (polA)
03440 Homologous recombination
EJA05_00405 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pory03032
]
EJA05_00405 (polA)
03400 DNA repair and recombination proteins [BR:
pory03400
]
EJA05_00405 (polA)
Enzymes [BR:
pory01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
EJA05_00405 (polA)
DNA replication proteins [BR:
pory03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EJA05_00405 (polA)
DNA repair and recombination proteins [BR:
pory03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
EJA05_00405 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EJA05_00405 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Obc1_cap
Prok-E2_E
Motif
Other DBs
NCBI-ProteinID:
AZL66285
UniProt:
A0A3S8UD53
LinkDB
All DBs
Position
76963..79728
Genome browser
AA seq
921 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSLFAVVFD
AKGGTFRDAMFAEYKANRPSMPDDLRVQVEPLHASVRALGYPLLCVEGVEADDVIGTLAR
SSAAAGRPVIISTGDKDMAQLVDGHVTLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM
GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDVYQNLDKVAGLAIRGAKTLAAKLEEHRDA
AFLSYELATIKCDVELDVEVDALVCGEPDREALLALYTEMEFKSWVAEVQRDAAQAAPKG
AATGPANVLEAPAAKVEPQYETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQKAQLVG
LSFAIEPNVAAYVPLAHDYEGAPAQLDREAVLQALKPLLEDPAKGKIGQNAKYDINILAN
GSPAIQMRGVAYDTMLESYVLNSTASRHDMDSLAQRYLEHTTISFEDIAGKGAKQLTFNQ
IPLEKAGPYAAEDADITLRLHHALQARLAETPSVLPVLMDIEMPLVPVLAKIERQGALVD
AALLGVQSGELGAKMVELEREAFELAGEEFNLGSPKQLGVILYDKLGMPVLSKTAKGQPS
TAEAVLDDLAEQGYPLPKVLMQYRSLSKLKSTYTDKLPGQINPRTGRVHTSYQQAVAATG
RLSSSDPNLQNIPVRTAEGRRIRQAFVASPGYKLLAADYSQIELRIMAHLAKDEGLLHAF
RNDLDVHRATAAEVFGVALEQVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQDY
IDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTAINAP
MQGTAADIIKRAMVAVDNWLTDSGLDARVILQVHDELVLEVREDLVEQVKDEIRGYMSGA
AELDVPLLVEVGVGSNWDEAH
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcgcccctcgtcctggtggacggttcctcctacctctaccgtgccttccac
gcgctgccgccgttgaccacttccaaaggcctgcccaccggcgcggtcaagggcgtgctg
aacatgctcaagagcctgcgcaagcaataccccgacagcctgttcgcggtggtgttcgat
gccaagggcgggaccttccgcgatgccatgttcgccgagtacaaggccaaccgcccaagc
atgcccgacgacctgcgggtgcaggtcgagccgctgcatgccagcgtgcgtgccctgggc
tacccgctgctgtgtgtcgagggtgtggaggccgatgacgtgatcggcaccctggcccgc
agcagcgcggccgccggccggccggtgatcatctcgaccggcgacaaggacatggcccaa
ctggtggacggccacgttacgctggtcaacaccatgaccggtagcgtgctggacgtggct
ggcgtgcacgagaagtttggcgtcggtcccgaacacatcatcgacttcctcgccctgatg
ggcgacaaggtcgacaacatccccggcgtgccgggcgttggcgagaagaccgcggtgggc
ctgttgaccggtatcggtggcgggctgagcgatgtgtaccagaacctggacaaagtcgcg
ggcctggccattcgcggggccaagaccctggccgccaagcttgaggagcatcgcgacgcg
gccttcctttcctacgagctggccaccatcaagtgcgatgtggagctggatgtcgaggtt
gacgccctggtttgcggcgagccggaccgtgaagccttgctggcgttgtacaccgagatg
gagttcaagagctgggtcgccgaggtgcagcgtgatgctgcccaggcagctcccaagggc
gccgccactggccctgccaatgtgctcgaggcacctgcggccaaggtcgagccgcagtac
gaaaccatccttgaccaggcgcgtttcgacgcctggctggagaagctgcgtcaggcaccg
ctgttcgccttcgacaccgaaaccaccggcctcgatgcgcagaaggcgcaactggtcggc
ctgtcgttcgccatcgaacccaatgtggctgcctacgtgcccctggcccacgactatgaa
ggcgcgcctgcccagttggaccgcgaggcagtgctgcaggcgctcaagccgctgctggaa
gacccggccaaaggcaagatcggccagaacgccaagtacgacatcaacatcctggccaac
ggcagccctgccatccagatgcgcggcgtggcctacgacaccatgctcgagtcctacgtg
ctcaattccaccgccagccgtcacgacatggacagcctggcgcagaggtacctcgagcac
accaccatcagcttcgaagacatcgccggcaagggcgccaagcagctgaccttcaaccag
atcccgctggagaaggccggtccctacgccgccgaggacgccgacatcaccctgcgcctg
caccatgccttgcaggcgcggctggccgaaacgccgagcgtgctgccagtgctgatggac
atcgaaatgccgctggtgccggtgctggcgaagatcgagcgccagggcgcgttggtcgat
gccgcgctgcttggggtgcagagcggtgagctgggggcgaagatggtcgagctggagcgc
gaggcgttcgagctggccggcgaggaattcaaccttggctcacccaagcaactgggggtg
atcctctacgacaagctgggcatgccggtgctgagcaagaccgccaagggccagccctcc
accgccgaagccgtgctggacgacctcgccgagcaaggctacccgctgcccaaggtgctg
atgcagtaccgcagcctgagcaagctcaagagcacctacaccgacaagctgccggggcag
atcaacccgcgtaccgggcgtgtgcatacctcttaccagcaggcggtcgccgccaccggg
cgtctgtcgtccagcgacccgaacctgcagaacattcccgtgcgcaccgccgaaggccga
cgcatccgccaggcctttgtcgcaagccccggctacaagctgctggcggcggactattcg
cagatcgagctgcgcatcatggcccacctggccaaggatgaggggctgttgcacgcgttc
cgcaacgacctggacgtgcaccgcgccaccgccgccgaagtcttcggcgtggcgctggag
caagtcaccaccgaccagcgccgcagcgccaaggcgatcaacttcggcctgatctacggc
atgagcgcattcggcctggccaagcagatcggtgtcgaccgcaaacagtcccaggactac
atcgaccgctacttcgcccgttacccgggcgtgctggcctatatggaacgcacccgcgcc
caggcggccgagcagggcttcgtcgaaaccttgttcgggcgccgcctgtacttgccggac
atcaacgccaagaacccggccctgcgcaaaggcgccgaacgcaccgcgatcaacgcgccg
atgcagggcactgcggcggacatcatcaagcgcgccatggtggcggtggacaactggctg
accgacagcgggctggatgcgcgggtgatcctgcaggtgcacgacgaactggtgctggaa
gtgcgcgaagacctggtggagcaggtcaaagatgaaattcgcggctacatgagtggcgcc
gccgagctggacgtgccgctgctggtggaagtgggcgtcggctcgaattgggacgaagct
cactaa
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