Pseudomonas oryziphila: EJA05_02515
Help
Entry
EJA05_02515 CDS
T07791
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pory
Pseudomonas oryziphila
Pathway
pory03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pory00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EJA05_02515 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pory03021
]
EJA05_02515 (rpoC)
03400 DNA repair and recombination proteins [BR:
pory03400
]
EJA05_02515 (rpoC)
Enzymes [BR:
pory01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EJA05_02515 (rpoC)
Transcription machinery [BR:
pory03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EJA05_02515 (rpoC)
DNA repair and recombination proteins [BR:
pory03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EJA05_02515 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AZL66677
UniProt:
A0A3Q8TYL9
LinkDB
All DBs
Position
521487..525686
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVKERDGSVVKNTRIVDTTVGRALLFQVVPAGLPYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGNATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDQGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEQWVEFIELNSIDEVVVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGDKVEAGAIVAKW
DPHTHPIVTELKGTVTFVGMEENITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIKM
VDANGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLAAEDKFISKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRREADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggtctggcgtcgcctgaaatgatccgttcgtggtcgttcggtgaagtcaaaaag
cccgagaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgtggtgtgatctgcgagaagtgcggcgttgaagtcgccctggccaaggttcgccgtgag
cgcatggcgcacatcgagctggcctcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgacatcgagcgcgtgctctac
ttcgagagctacgtcgtgatcgacccgggcatgaccaccctcgagaagggtcagctgctc
aacgacgaacagtacttcgaagcgctggaagagttcggtgacgacttcgacgcccgcatg
ggtgccgaggctgtccgcgagctgctgcacgctatcgacctggagcacgagattggccgc
ctgcgcgaagaaattccgcaaaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagctttccagggctcgggcaacctgcctgagtggatggtcctgacc
gtcctgccagttctgccgccggacctgcgtccgctggtaccgctggatggcggccgcttc
gcgacctccgacctgaacgatctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctcgatctgtcggcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaggcggtcgacgccctgctcgacaacggccgtcgcggtcgcgccatcactggctcgaac
aagcgtccgctgaagtcgctggccgacatgatcaaaggtaagcaaggtcgcttccgtcag
aacttgctcggtaagcgcgtggactactccggtcgttcggtaattaccgtaggcccgacc
ctgcgcctgcaccagtgcggtctgccgaagaagatggccctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggccgccaagaagatg
gtcgagcgcgagctgccagaggtgtgggacgttctcgccgaagtgattcgcgaacacccc
gtactgctcaaccgtgcaccgacccttcaccgtctgggtatccaggcctttgaaccggta
ctgatcgaaggtaaggcgattcagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgacgctggaagcccagctcgaagcg
cgcgcgctgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtactgggtctgtactacatgacccgtgaagccatcaacgcc
aagggcgaaggtcgcgtattcgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaggctgccctgcacgcgaaaatcaaggttcgtatcaacgaaaccgtgaaagagcgtgat
ggttcggtggtcaagaacacccgcatcgtcgacaccaccgttggccgtgcgctgctgttc
caggttgtaccggcaggcctgccgtacgacgtggtcaaccagccgatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtcttaaagagaccgttatcttc
gctgaccagctgatgtacaccggtttcgcttactcgaccatttccggcgtttccatcggt
gttaacgacttcgttatcccggacgagaaagcccgcatcatcggtaacgctaccgatgaa
gtgaaggaaatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtcatcgacttgtggtcgaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgcgaaggcaaggaagtcgagcaagaatccttcaac
tcgatgtacatgatggctgactccggtgctcgtggttccgcggcccagatccgtcagctg
gccggtatgcgtggcctgatggccaagccggacggctcgatcatcgagacgccgatcacc
gcgaacttccgtgaaggtctgagcgtactgcagtacttcatctcgactcacggtgctcgt
aaaggtctggcggataccgcactgaagacagctaactccggttacctgactcgccgtctg
gtggacgttgcccaggatctggtcgtgaccgagatcgactgcggcaccgaccagggcctg
ctgatgaccccgcacatcgaaggcggcgacgttgtcgagccgctgggtgagcgcgtactg
ggtcgtgtcatcgcccgtgacgtgttcaagccaggtaccgaggacgtcatcgttcctgcc
ggcactctggtcgatgagcagtgggtcgagttcattgagctgaacagcatcgacgaagtg
gtcgtgcgttcgccgatcagctgcgaaacccgctacggcatctgcgccaagtgctacggt
cgcgacctggctcgcggtcaccaggtgaacatcggtgaagctgtcggcgttatcgctgca
cagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccgtacttcggctgccgacagcgtccaggtgaagaacggcggtatggtgcgtctg
cacaacctgaagcaggtcgagcgtgccgatggcaacctggttgccgtgtcgcgttcaggc
gaactggccattgccgatgaattcggtcgtgagcgtgagcgctacaagctgccttacggt
gcggtgatttcggtcaaggaaggtgacaaggtcgaagctggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgttaccgagctgaaaggtaccgtgaccttcgtgggcatg
gaagaaaacatcaccatcaagcgccagaccgacgaactgaccggtctgaccaacattgaa
gtcctggacgtcaaggatcgccctgccgcaggcaaggaaatccgtccggccatcaagatg
gtcgatgccaatggcaaggatctgtacctgccaggtaccgatgtacctgctcagtacttc
ctgccagccaacgccctcgtcggtgtggctgacggtgctcagatcggcgtcggtgatgtt
attgcgcgtatcccgcaagaaacttcgaagacccgtgacatcaccggtggtctgccacgc
gttgccgacctgttcgaagcgcgtcgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccatcgccttcggtaaagagaccaagggcaagcgccgtctggtcatcaccccgacc
gatggcagcgatccgtacgaagagctgattccgaagtggcgccacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggcccgagcgatccgcacgacatc
ctgcgtctgctgggtgtgagcgcgctggcgaagtacatcgtcaacgagatccaggacgtt
taccgtctgcaaggcgttaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgcaaggtcgagatcgccgagtcgggtgactccagcttcatcaagggcgaccagatg
gaactgactcacgtgctggtcgagaacgagcgtctcgccgccgaagacaagttcatctcg
aagttcacccgtgtgctgctgggtatcaccaaggcctcgctgtcgaccgaatcgttcatc
tccgcggcttccttccaggaaaccacccgcgtactgaccgaagcggccgttaccggcaag
cgcgattacctgcgcggcctgaaagagaacgtggtcgtgggtcgtctgatcccggccggt
accggtctggcctatcacagcgagcgcaagcgccgccgtgaagccgacaagccgctgcgt
gtgagcgccagtgaggtggaagccgcactgaccgaagcgctgaactccagcggtaactaa
DBGET
integrated database retrieval system
