Pseudomonas oryziphila: EJA05_03520
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Entry
EJA05_03520 CDS
T07791
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pory
Pseudomonas oryziphila
Pathway
pory03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pory00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJA05_03520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pory03019
]
EJA05_03520
Enzymes [BR:
pory01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EJA05_03520
Messenger RNA biogenesis [BR:
pory03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EJA05_03520
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AZL66866
UniProt:
A0A3S8UEX9
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All DBs
Position
730255..731586
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AA seq
443 aa
AA seq
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MNFAQLGLIEPLLRTLQTLDYSTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVL
QRLALEGEKVASNSIRALVLVPTRELAEQVHANVREYAENLPLSTYAVYGGVSINPQMMR
LRRGVDLLVATPGRLLDLFRQNAIKFGQVQTLVLDEADRMLDLGFAEELRSVYAALPRKR
QTLLFSATFSEQIRLLAGLALNDPLSIEVSPRNAAATTVKQWLVPVDKKRKADLFCHLLR
KQRWSQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREVQVLVA
TDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQMLASIE
TLIRQQLPRHEEPDFIPDHRVPMIDASGQVVKKPKKPKKPKENSAKRGLGRWMDSDEGGA
AAPSVKAVRKVPSFNGGPRKRKP
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcgcccaactcggcctgatcgaaccgctgctgcgcaccttgcagacgctggac
tacagcacacccaccccggtccaggccaaggccatccccgccgtgcttgccggccgcgac
ctgatggccgccgcccagaccggcaccggcaagaccgcaggctttgccctgccggtgctg
cagcgcctggccctggaaggcgagaaggtcgccagcaactcgatccgcgcgctggtgctg
gtgcccacccgcgaactggccgagcaggtccacgccaacgtgcgcgaatatgccgagaac
ctgccgctgtccacctacgcggtatacggcggggtcagcatcaacccgcagatgatgcgc
ctgcgccgtggcgtcgacctgctggtggccacccccggccggttgctcgacctgttccgc
cagaacgcgatcaagttcggccaggtgcagaccctggtactcgacgaagccgaccgcatg
ctcgacctgggctttgccgaagagctgcgctcggtgtacgccgcgctgccgcgcaagcgc
cagaccctgctgttctcggccaccttctccgagcagatccgcctgctcgccggccttgcg
ttgaacgacccgctgagcatcgaagtcagcccgcgcaacgccgccgccaccaccgtcaag
caatggctggtgccggtggacaagaagcgcaaggccgacctgttctgtcacctgctgcgc
aagcagcgctggtcccaggtgctggtgttcgccaagacccgcaacggcgtggaccagctg
gtcgagcgcctgctcgccgaaggcgtcaacgccgatggcatccacggcgatcgcccgcag
gccacccgccagcgcgcgctggacagcttcaaggcccgtgaggtccaggtgctggtggcc
accgatgtcgccgcgcgcggcctggacatcgacgacctgccgctggtggtcaacctcgac
ctgccgatcgtggccgaagactacgtgcaccgcatcgggcgcaccggccgtgctggtaac
aagggtgaggcgatctcgctggtgtgcgctgacgaagtgcagatgctcgcgtcgatcgag
accttgattcgccagcagttgccacgccatgaagagccggatttcatccctgatcaccgg
gtgccgatgatcgatgccagtggccaggtggtgaagaaaccgaagaagcctaaaaagccg
aaagagaacagcgccaagcgcgggctggggcgttggatggacagcgacgagggcggggcc
gcggcgccatcggtcaaggcggtgcgcaaggtgccgagctttaacggtgggccgcgcaag
cgtaagccataa
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