Pseudomonas oryziphila: EJA05_06345
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Entry
EJA05_06345 CDS
T07791
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pory
Pseudomonas oryziphila
Brite
KEGG Orthology (KO) [BR:
pory00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pory03021
]
EJA05_06345 (rapA)
Transcription machinery [BR:
pory03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
EJA05_06345 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
PRKG1_interact
Motif
Other DBs
NCBI-ProteinID:
AZL67386
UniProt:
A0A3Q8TZV1
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All DBs
Position
complement(1334781..1337627)
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AA seq
948 aa
AA seq
DB search
MAQQYQPGQRWISDSEAELGLGTILAEDGRLLTVLYPATGETRQYSLRNAPLTRVRFSPG
DQIIHFEGWKLTVREVEVIDGLLIYHGIDAQNQAHVLPETQLSNFIQFRLASDRLFAGQI
DPLSWFSLRYNTLQHTSKQMLSSLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVG
LGKTIEAGLVIHRQLLSGRANRVLILVPENLQHQWLVEMRRRFNLQVALFDAERFIESDA
TNPFEDAQLALVALEWLVDDEKAQDALFAAGWDLMVVDEAHHLVWHEEQASAEYALVEQL
AEVVPAVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESENYRPVAEAVQELLDE
GRLSPKAHATIQGFLGAEGEALLAAVTDGDSQASARLIRELLDRHGTGRVLFRNTRAAIQ
GFPERQLHPYPLANPEPYAALPSGERAELYPEVAFQAQGEPGDDERWWRFDPRVDWLIDT
LKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMSILERDRAAAYFADEEFGA
QVLICSEIGSEGRNFQFAHHLVMFDLPAHPDLLEQRIGRLDRIGQKHTIELHIPYLQDSP
QERLFQWYHEGLNAFLNTCPTGNALQHQFGPRLLAQLAGGDDKGWTKLVGEARAERERLE
AELHTGRDRLLELNSGGAGEGQALVEAILEQDDQFALPIYMETLFDAFGIDSEDHSENAL
VLKPSEKMLDASFPLGDDEGVTITYDRAQALSREDMQFLTWEHPMVQGGMDLVLSGSMGN
TAVALIKNKALKPGTVLLELLYVSEVVAPRSLQMGRYLPPAALRCLLDANGNDLAPRVAF
ETLNDQLESVPKASANKFVQAQRDVLAKRISAGEAKVIPVHEERVAQAQQRLAAEADEEL
ARLTALKAVNPSVRDSEIDALRQQREDGMAALNKAALRLEAIRVLVAG
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcagtatcaaccggggcaacgctggatcagcgacagcgaagcagagctcgga
cttgggaccatcctggccgaggatggtcgcttgttgaccgtgctctacccggcgacgggg
gaaacccgccagtactcgctacgcaacgcgccgctgacccgcgtgcgcttctcgccaggc
gaccagatcatccacttcgaaggctggaagctgaccgtgcgcgaagtcgaggtcatcgac
ggcctgctgatctatcacggcatcgacgcccagaaccaggcgcatgtgctgcccgagacc
cagctgtcgaacttcatccagttccgcctggccagtgaccgcctgttcgccggccagatc
gacccgctgtcgtggttctccctgcgctacaacaccctgcagcacaccagcaaacagatg
ctgtcgtcgctgtggggcctgggcggcgtgcgcgcccaacccatcgcccaccagttgcac
atcgcccgcgaagtggccgaccgtatcgccccgcgcgtgctgctggccgacgaagtaggc
ctgggcaagaccatcgaagcgggcctggtgatccaccgccagctgttgtccggccgcgcc
aaccgggtgctgatcctggtaccggagaacctccagcaccagtggctggtggaaatgcgc
cgccgcttcaacctgcaggtcgccctgttcgacgccgagcgcttcatcgaaagcgatgcc
accaacccgttcgaagacgcccaactggcgctggtcgccctggaatggctggtcgacgat
gaaaaggcccaggacgcgctgttcgccgccggttgggacctgatggtggtcgacgaggct
caccacctggtctggcacgaagaacaggccagcgccgaatatgccctggtcgagcaactg
gccgaggtcgtcccggccgtgctgctgcttaccgccacccctgaacaactcggccaggac
agccacttcgcccgcctgcgcctgctcgaccccaaccgtttccacgacctggccgcgttc
cgcgccgagagcgaaaactatcgcccggtggcggaggcagtgcaggagctgcttgacgaa
ggccgcctgtcgccgaaagcccatgccaccatccagggtttcctgggggccgagggtgaa
gccctgctggccgccgttaccgatggcgacagccaggccagcgcgcgcctgatccgcgag
ctgctcgaccgtcacggcactggccgcgtactgttccgcaacacccgcgcggcgatccag
ggtttccccgagcgccagctgcacccctacccgctggccaaccccgagccgtatgccgcg
ctgccatccggcgagcgtgccgagctgtacccggaagtggccttccaggcccagggcgag
cccggcgacgacgagcgctggtggcgcttcgacccgcgcgtcgactggctgatcgacacc
ctgaagatgctcaagcgcaccaaggtcctggtgatctgcgcccacgccgaaaccgccatg
gacctggaagacgccctgcgcgtgcgctccggcatcccggccacggttttccacgaaggc
atgagcatcctcgagcgcgaccgcgccgccgcctacttcgccgacgaagagttcggcgcc
caggtgctgatctgctccgagatcggcagtgaaggccgcaacttccagttcgcccaccac
ctggtgatgttcgacctgccggcgcacccggacctgctcgagcaacgcatcggccgcctc
gaccggatcggccagaagcacaccatcgaactgcacatcccatacctgcaggacagcccc
caagagcgcctgttccagtggtaccacgaaggcctcaacgccttcctcaacacttgcccg
accggcaacgccctgcagcaccagttcggcccgcgcctgctggcgcaactggccggtggc
gacgacaagggctggaccaagctggtcggcgaagcccgcgccgagcgcgagcgcctggaa
gccgagctgcacaccggccgcgaccgtctgctggagctcaactccggcggtgccggcgaa
ggccaggcgctggtcgaggcgatcctcgagcaggacgaccagttcgccctgccgatctac
atggaaaccctgttcgacgccttcggcatcgacagcgaagaccattccgagaacgccctg
gtgctcaagccgagcgagaaaatgctcgacgccagcttcccactgggcgacgacgagggc
gtgaccatcacctacgaccgcgcccaggcgctgtcgcgcgaggacatgcagttcctcacc
tgggagcacccgatggtgcagggcggcatggacctggtgctgtccggctcgatgggcaac
accgccgtggcgctgatcaagaacaaggcgctcaagcccggcaccgtgctgctcgagctg
ctctatgtcagcgaagtggtcgccccgcgcagcctgcagatgggccgctacctgccaccg
gcggcgctgcgctgcctgctcgacgccaatggcaacgacctggccccgcgcgtggccttc
gagaccctcaacgaccagcttgaaagcgtgcccaaggccagcgccaacaagttcgtccag
gcccagcgcgatgtcctggccaagcgcatcagcgcgggtgaagccaaggtcattccggtc
catgaggagcgggttgcccaggcacagcaacgcctggccgccgaggctgacgaagagctg
gcgcgcctgacagcgctcaaagccgtcaacccgagcgtgcgcgacagcgaaatcgacgcc
ctgcgccagcagcgcgaagacggcatggccgcgctgaacaaggccgccttgcgcctggag
gccatccgggtactggtcgccggctga
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