Pseudomonas oryziphila: EJA05_06710
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Entry
EJA05_06710 CDS
T07791
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pory
Pseudomonas oryziphila
Brite
KEGG Orthology (KO) [BR:
pory00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pory03009
]
EJA05_06710 (rlmD)
Enzymes [BR:
pory01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EJA05_06710 (rlmD)
Ribosome biogenesis [BR:
pory03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EJA05_06710 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_25
Methyltransf_31
MTS
Cons_hypoth95
Methyltransf_11
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_23
Methyltr_RsmB-F
Methyltransf_15
PCMT
TPMT
DREV
Ubie_methyltran
PrmA
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
AZL67451
UniProt:
A0A3S8UGP9
LinkDB
All DBs
Position
1417951..1419309
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AA seq
452 aa
AA seq
DB search
MSRKKSNSGLRFQPAGGDRSTQVPVGKKQRLQIERLAGDGRGIAFVEGRTWFVSGALGGE
EVEARVLAARGKVVEARLERVFQASPERRQAPCKHYQRCGGCSLQHLPHDGQLALKQRTL
AEQLQRVAGIQPEEWAAPLSGPEFGYRRRARVAVRWDAKARQLDVGFRAEASQDIVAIDE
CPVLVQPLQSIFRHLPTVLRSLSKPQALGHVELFSGSAEAVLVRHVAALPAEDLARLEAF
CREAGAQLWLQGEGDPAPVDDANELGFALDPWALQLAWRPGDFVQVNAQVNTLMIQQALA
WLAPQADERVLDLFCGLGNFALPLARQAREVVAVEGVQAMVERAEANARSNNVHNARFFQ
ADLSQPLAGAGWVAEGFSAVLLDPPRDGAYEVVQGIARLGAKRLVYVSCNPATLARDAQV
LVGQGYRLKRAGILDMFPQTAHVEAMALFEVG
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtccagaaagaaaagcaacagcggcctgcgcttccagccggccggcggtgaccgtagc
acccaggtgcccgtgggcaagaagcagcgcctgcagatcgagcgcctggccggtgatggt
cgcggcatcgccttcgtcgaggggcgcacctggttcgtcagcggtgcgctgggcggcgaa
gaggttgaagcgcgggtgctcgcggcccgcggcaaggtagtcgaggcgcgccttgagcgt
gtgttccaggccagccccgagcgtcgccaggcgccgtgcaaacattaccagcgctgcggt
ggctgcagcctgcagcacctgccccatgacggccagctggcgctcaagcagcgtaccctc
gccgagcagttgcagcgtgtcgccggcatccagccggaggagtgggccgcgcccctgagc
gggcctgagttcggctatcgacgccgggcgcgggtggccgtacgctgggacgccaaggcc
cgtcaactggacgtgggctttcgtgccgaggccagccaggacatcgtcgccatcgacgag
tgcccggtactggtacaacccttgcaatcgattttccgccacttgccgaccgtactgcgc
agcttgagcaagccgcaggcactggggcatgtggagctgttcagcggcagtgccgaagcg
gtactggtgcgccatgtggcggcccttcctgctgaagacctggcgcgcctcgaggcattc
tgccgcgaggccggcgcccagttgtggctgcagggcgaaggcgacccggcaccggtggat
gacgcaaatgagctgggttttgccctggatccttgggcgttgcaactggcctggcggcca
ggcgacttcgtgcaggtcaatgcccaggtcaacaccctgatgatccagcaggccctggcc
tggctggcgccgcaggcggatgagcgggtgctggacctgttctgtggcctgggcaacttc
gccttgccgttggcccggcaggcgcgggaagtggtggcagtcgaaggtgtgcaggccatg
gtcgagcgcgccgaggccaatgcccgcagcaacaatgtgcataacgcacgattttttcag
gccgatttatcgcagcctttggcgggcgccggatgggtcgccgagggcttttctgcggta
ctcttggatccaccgcgcgacggggcttacgaggtggtgcaaggcatcgctcggctcggc
gcgaaacggctggtctacgtatcgtgcaacccggccacgctggcgcgagacgcgcaggtg
ctggtcgggcaggggtaccggttaaaaagggccgggattctcgacatgtttcctcagacg
gcgcatgtcgaggccatggcgttattcgaagtgggctag
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