Pseudomonas oryziphila: EJA05_07915
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Entry
EJA05_07915 CDS
T07791
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pory
Pseudomonas oryziphila
Pathway
pory03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pory00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EJA05_07915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pory03019
]
EJA05_07915
03009 Ribosome biogenesis [BR:
pory03009
]
EJA05_07915
Enzymes [BR:
pory01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EJA05_07915
Messenger RNA biogenesis [BR:
pory03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EJA05_07915
Ribosome biogenesis [BR:
pory03009
]
Prokaryotic type
rRNA helicases
EJA05_07915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
AZL67678
UniProt:
A0A3S8UH85
LinkDB
All DBs
Position
1676323..1678008
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AA seq
561 aa
AA seq
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MTQETGGFAALELNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILNKIDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLR
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPAS
RQTVLFSATLPSSIRSIAERHLREPKHVKIQSKTQTVTAIDQAHLMVHADQKIPAVLRLL
EVEEFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEARLPNPQAVLDARIKKLTKSLAPLVAESEASHGELFDRLTADLGCSARAL
ASALLRKATNGQALDLASVEREQPLVPTHSPRERSTGERGERGERSERSGDRERRAPMPL
AEGRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVELPEDGLERLL
TKLKDTRVAGKQLKLRRYRED
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggattcgccgctctcgaactcaatccgaatattgttgctgcc
gtcgtggccaccggctacgaagagccgtcggccattcagcaacagtcgatcccgatcatc
ctcgccggtcacgacatgatcggccaggcgcagactggcaccggcaagaccgctgccttc
gccctgccgatcctcaacaagatcgacgtgagcaagcgcgaaccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagttgctaccgctttcgaaacctacgccaagcag
atgccgggcgttaacgtggtggctgtttacggtggtgccccgatgggcccacaactgcgt
gccatccgtaacggcgcgcaaatcgtcgtcgctacccctggccgtctgtgcgaccacctg
cgtcgcgacgagaaagtcctgtccaccgtgcagtacctggtactggacgaagcggacgag
atgctcaagctcggtttcatggacgacctcgaagtgatcttcgatgccatcccggcctcg
cgccagaccgtgctgttctccgccaccctgccgtcttcgatccgttcgatcgccgagcgc
catctgcgcgagccgaagcacgtcaagatccagagcaagacccagaccgtcaccgcgatc
gaccaggcccacctgatggtccatgccgaccagaagatcccggctgttctgcgcctgctg
gaagtggaagagttcgacgcgctgatcgccttcgtgcgtaccaagcaagccaccctggac
ctggccgccgcgctggaagccaagggttacaaggctgccgcactgaacggtgacatcgcc
cagaaccagcgtgagcgcgtgatcgactcgctcaaggatggccgcctggacatcgtcgtc
gccaccgacgtcgctgcccgtggcctggacgtaccgcgcatcactcacgtgttcaacgtt
gacatgccgtacgacccggagtcctacgtgcaccgtatcggccgtaccggccgtgccggt
cgcgaaggccgtgcgctgctgctggtcaccccgcgtgagcgccgcatgctgcaggtcatc
gagcgtgttaccggccagaaggtcgccgaagcccgcctgcctaacccgcaagccgtgctc
gatgcgcgcatcaagaagctgaccaagagcctggcgccgctggtggccgagtccgaggcc
agccacggcgagttgttcgaccgcctgaccgccgacctgggttgcagcgcgcgtgcactg
gcttcggccctgctgcgcaaggccaccaatggccaagccctggacctggcttcggtggag
cgcgagcagccgctggtgccgacccacagcccgcgcgagcgcagcaccggtgagcgtggc
gagcgtggtgagcgtagcgagcgcagtggtgaccgcgagcgtcgtgcgccgatgccgctg
gccgaaggccgcgtgcgttgccgtaccgccctgggtgcccgtgacggtatcgccgccaag
aacctgctgggcgcgatcctcaacgaaggtggcctggcgcgtgacgccatcggccgcatc
caggtacgcgacagcttcagcctggtcgagctgccggaagatggcctggagcgtctgctg
accaagctcaaggacacccgcgtagccggtaagcagctgaagctgcgccgctaccgcgag
gattga
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