Pseudomonas oryziphila: EJA05_20665
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Entry
EJA05_20665 CDS
T07791
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pory
Pseudomonas oryziphila
Brite
KEGG Orthology (KO) [BR:
pory00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pory03009
]
EJA05_20665
Enzymes [BR:
pory01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EJA05_20665
Ribosome biogenesis [BR:
pory03009
]
Prokaryotic type
rRNA helicases
EJA05_20665
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AZL69985
UniProt:
A0A3S8UNM3
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All DBs
Position
complement(4422660..4423982)
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AA seq
440 aa
AA seq
DB search
MFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLN
RLVDRSGPSVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTGGEDFKEQAAMLRK
VPDVLIGTPGRLLEQLNAGNLDLSHVDVLILDEADRMLDMGFAEDMERLCKECENRKQTL
LFSATTGGAALRDMIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHDQHKEQIVQWLLAN
ETYQKAIIFTNTRALADRIYGHLVAKEVKAFVLHGEKDQKDRKLAIDRFKEGGSKVLVAT
DVAARGLDIDGLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAISLITHNDWNLMSSIER
YLKQQFERRVIKEVKGTYSGPKKVKASGKAAGTKKKKTEKKTGDKKGAAKRKPTAKPKAN
APLASSDGMAPLKKRKPAAE
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
gtgttttcccaattcgccctgcacgaacgcctgctcaaagccgtggccgagctgaaattt
gtcgagccgactccggtgcaggcagcggccattcccctggccctgcaagggcgtgacctg
cgggtgacggcacagaccggcagcggcaagaccgctgcattcgtcctgccactgctcaac
cgcctggtcgaccgcagcggcccgagcgtggaaatccgtgcgctgatcctgctgccgacc
cgcgagctggcccagcagaccctcaagcaggtgcagctgttctcccagttcacctacatc
aagtcgggcctggtcaccggtggtgaggacttcaaggaacaggccgccatgctgcgcaag
gtgccggacgtgctgatcggcaccccgggccgtctgctcgagcagctcaacgccggcaac
ctcgacctgtcccatgtggacgtgctgatcctcgatgaagccgaccgcatgctcgacatg
ggctttgccgaagacatggagcgcctgtgcaaggagtgcgagaaccgcaagcagaccctg
ctgttctccgccactaccggcggcgcggccctgcgcgacatgatcggcaaggtcctcaaa
gaccctgagcacctgatgctcaacagtgtctcgcagctcgccgaaggtacccgccagcag
atcatcactgctgaccacgaccagcacaaagagcagatcgtgcagtggctgctggccaac
gagacctaccagaaggcaatcatcttcaccaacacccgtgccctggccgaccgcatctat
ggccatctggtggccaaggaagtgaaggccttcgtactgcacggcgagaaggaccagaag
gaccgcaagctggccatcgaccgcttcaaggaaggcggctccaaggtgctggtggccact
gatgtggcggcgcgcggcctggacatcgacgggctggacctggtgatcaacttcgacatg
ccacgcagcggcgacgagtacgtgcaccgtatcggccgtaccggtcgtgccggcggcgaa
ggcctggcgatctcgctgatcacccacaacgactggaacctgatgtcgagcatcgaacgc
tacctcaagcagcagttcgagcgccgtgtcatcaaggaggtcaagggtacctacagcggg
ccgaagaaggtcaaggcctcgggcaaggcggctggcaccaagaagaaaaagaccgagaag
aagaccggcgacaagaagggcgccgccaagcgcaaaccgaccgccaagccgaaggccaat
gcgccattggccagttccgatggcatggcgccgctgaagaagcgcaagccggcggccgag
taa
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