Pseudomonas oryziphila: EJA05_24245
Help
Entry
EJA05_24245 CDS
T07791
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pory
Pseudomonas oryziphila
Pathway
pory02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pory00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
EJA05_24245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pory03021
]
EJA05_24245
Transcription machinery [BR:
pory03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EJA05_24245
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
PhyR_sigma-like
HTH_11
HTH_23
HTH_38
HTH_7
HTH_IclR
HTH_DeoR
TetR_C_31
HTH_29
PAC_M
Motif
Other DBs
NCBI-ProteinID:
AZL70652
LinkDB
All DBs
Position
5192424..5192939
Genome browser
AA seq
171 aa
AA seq
DB search
MQIPDTLQPAEVDLLYRNHHSWLRNWLSARTGCRDNAADLAQDTFVRLLKARQVSPLKAP
RAYLSSIARGLMIDQFRRRALEIAYLESLANLPELQAPSEEQRLVILDTLERLDNALHSL
KPRARQAFLMAQLDGLPLAQIALRLDVSRATVERDLAKALGVCYRLRYADL
NT seq
516 nt
NT seq
+upstream
nt +downstream
nt
atgcagatccctgacacgctgcaaccggccgaagtcgatctgctctatcgcaatcaccac
agctggttgcgcaactggctcagcgcccgcaccggctgccgggacaacgccgccgacctc
gcccaggacaccttcgtgcgcctgctcaaggcgcgccaggtttcaccgctgaaagcgccg
cgtgcctacttgagcagcattgcccgtggcctgatgatcgaccagtttcgccgccgcgcc
ctggaaatcgcctacctcgaaagcctggccaatctgccggaactgcaagcgcccagcgaa
gaacagcgcctggtcatcctcgacaccctcgaacgcctcgacaacgccctgcacagcctc
aagccccgcgcgcgccaggccttcctcatggcccagctcgacggcctgcccctggcccag
atcgccctgcgcctggacgtgtcgcgggccacggtcgagcgcgacctggccaaggccctg
ggcgtctgctatcggttgcgctatgccgacctctga
DBGET
integrated database retrieval system
