Pseudomonas oryziphila: EJA05_24440
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Entry
EJA05_24440 CDS
T07791
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
pory
Pseudomonas oryziphila
Pathway
pory00260
Glycine, serine and threonine metabolism
pory00460
Cyanoamino acid metabolism
pory00630
Glyoxylate and dicarboxylate metabolism
pory00670
One carbon pool by folate
pory00680
Methane metabolism
pory01100
Metabolic pathways
pory01110
Biosynthesis of secondary metabolites
pory01120
Microbial metabolism in diverse environments
pory01200
Carbon metabolism
pory01230
Biosynthesis of amino acids
pory01240
Biosynthesis of cofactors
pory04981
Folate transport and metabolism
Module
pory_M00975
Betaine degradation, bacteria, betaine => pyruvate
Brite
KEGG Orthology (KO) [BR:
pory00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
EJA05_24440
09102 Energy metabolism
00680 Methane metabolism
EJA05_24440
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
EJA05_24440
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
EJA05_24440
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
EJA05_24440
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
EJA05_24440
Enzymes [BR:
pory01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
EJA05_24440
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Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
Cys_Met_Meta_PP
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-ProteinID:
AZL70687
UniProt:
A0A3Q8U4S5
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All DBs
Position
5234451..5235704
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AA seq
417 aa
AA seq
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MFSRDLTIAKYDAELFEAMQQEALRQEEHIELIASENYTSPAVMEAQGSVLTNKYAEGYP
GKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHAGSQANAAVYLALLSAGDTILGMS
LAHGGHLTHGASVSSSGKLYNAIQYGIDGNGLIDYDEVERLAVEHKPKMIVAGFSAYSQV
LDFARFREIADKVGAYLFVDMAHVAGLVAAGVYPNPVPFADVVTTTTHKTLRGPRGGLIL
ARANADIEKKLNSAVFPGAQGGPLEHVIAAKAICFKEALQPEFKAYQQQVVKNAQAMASV
FIERGFDVVSGGTQNHLFLLSLIKQEISGKDADAALGKAFITVNKNSVPNDPRSPFVTSG
LRFGTPAVTTRGFKEAECKELAGWICDILADLNNEAVIDAVREKVKAICKKLPVYGN
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgttcagccgtgatttgaccattgccaagtacgacgccgagctcttcgaagccatgcag
caagaagccctgcgccaggaagagcatatcgagctgatcgcttcggaaaactacactagc
cccgccgtcatggaagcccagggttcggtactgaccaacaagtacgccgaaggctaccca
ggcaagcgctactacggtggttgcgagtacgtcgacgtggtcgagcaactggccatcgac
cgcgccaaagagctgttcggcgccgactacgccaacgtccagccgcacgccggctcccag
gccaacgccgccgtctacctggcgctgctgtcggccggtgacaccatcctgggcatgagc
ctggcccacggtggccacctgacccacggtgcttcggtaagctcgtcgggcaagctgtac
aacgccatccagtacggcatcgacggcaacggcctgatcgactacgacgaagtcgagcgc
ctggcggtcgagcacaagccgaagatgatcgttgccggcttctctgcctactcgcaggta
ctggacttcgcccgcttccgcgaaatcgccgacaaggtcggtgcctacctgttcgtcgac
atggctcacgtcgccggcctggttgccgctggcgtgtacccgaacccggtgccgttcgcc
gacgtggtcaccaccaccacccacaagaccctgcgcggtccacgtggcggcctgatcctg
gcccgtgccaacgccgacatcgagaagaagctgaactccgccgtcttccctggcgcccag
ggcggcccgctggagcacgtcatcgccgccaaggcaatctgcttcaaggaagccctgcaa
cctgagttcaaggcctaccagcagcaagtggtgaagaacgcccaggccatggcttcggtg
ttcatcgagcgcggtttcgacgtggtttccggcggcacccagaaccacctgttcctgctg
tcgctgatcaagcaggaaatctccggtaaggacgccgacgccgccctgggcaaggccttc
atcaccgtcaacaagaactcggtgccgaacgacccacgttccccgttcgtcacctcgggc
ctgcgtttcggcaccccggccgtgaccacccgtggcttcaaagaagccgagtgcaaagag
ctggccggctggatctgcgacatcctggccgacctgaacaacgaagcggtgatcgacgcc
gtgcgtgagaaggtcaaggccatctgcaagaagctgccggtgtacggcaactga
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