Polaromonas sp. SP1: DT070_02835
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Entry
DT070_02835 CDS
T05689
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pos
Polaromonas sp. SP1
Brite
KEGG Orthology (KO) [BR:
pos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pos03016
]
DT070_02835
Enzymes [BR:
pos01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DT070_02835
Transfer RNA biogenesis [BR:
pos03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DT070_02835
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Gene cluster
GFIT
Motif
Pfam:
RNB
Myosin_N
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AYQ27056
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Position
595526..597586
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AA seq
686 aa
AA seq
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MFVLFEEAGKFLAGRILSESDASLQVELDSGKRVKVKGVNALLRFEKPSPADMVAAGQKL
SQDIELDLAWEFASEEEFGFADLARDYFSADGKAATLEQQAAALFRLYDAPHYFRRAGKG
RFKKAPAEILQQALAAIEKKKQIAAQITAWAEELGRGECPAPVREQLYKILFKPDKNSAE
YKAVVEASRATHTAPLDLLQKSGAIASPYQFHWKRFLFENFPKGTGFPALQAPEVKDELP
LADVKAFSIDDSATTEIDDALSVQGLGSGTVTLGIHIAAPGLAVLPGSPIDTVGRARLST
VYMPGYKLTMLPDEIVKSYTLQEGRNCPSLSLYITLDEATLEIKDSVTRLEQVPIVSNLR
HDVLDSTFTEAFFEAAQTTPPTGVEWGVELSFLHRLAKHLKAQREVARGKPENFNRPDYN
FRLDNPTGAEPQGNEAVSISTRQRGAPLDLIVAEAMILANSTWGQWLAEHGVPGIYRSQA
SLAPGVKVRMGTKALPHAGLGVKSYAWSTSPLRRYTDLVNQWQIIACARHGRTAALAAPF
KPKDAELFSIISGFDAAYSAYNGFQAGIERYWTLKYLQQNNITELTATAFKDNLVRADEL
PLVLPAVGAQGLPRGAKVRVKLGEIDEITLDISGTVIERLDVDIDESPDPLGEEDGESEM
AAGPISIAVDVNEPQTDAAAAAPVAG
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgtattgtttgaagaagccggcaagtttctggccggccgcattttgtccgagagc
gacgcctcgctgcaggtcgagctcgactcgggcaagcgcgtgaaggtcaagggcgtcaac
gccctgctgcgatttgaaaaaccctcgcctgccgacatggtggccgcgggccagaaattg
agccaggacatcgagctcgacctggcctgggaatttgccagcgaagaagaattcggtttt
gccgacctggcgcgcgactacttcagcgccgacggcaaggccgccacgctggagcagcag
gccgccgccctctttcgcctgtacgacgcgccgcattactttcgccgcgctggcaagggc
cgcttcaaaaaagcccccgccgaaatcctgcagcaggcgctggccgccatcgagaaaaag
aaacagatcgcagcacagatcaccgcctgggccgaagaactgggccgcggcgaatgtccg
gcgccggtgcgcgagcagctgtacaaaatccttttcaagcccgacaaaaacagcgctgaa
tacaaggctgtggtcgaggcctcgcgcgccacgcacaccgcgccgctcgatctgctgcaa
aagtccggcgccatcgcttcgccctaccagttccactggaagcgctttctgtttgaaaac
ttccccaagggcaccggcttccccgcgctgcaggcgcctgaagtcaaggacgagctgccg
cttgccgacgtgaaggcgttttccatcgacgactcggccaccaccgagatcgacgacgcg
ctctccgtgcaaggcctgggcagtggcaccgtcacgctgggcatccacatcgccgccccc
ggcctggccgtcttgcccggcagcccgattgacaccgtgggccgcgcgcggctgtccacc
gtctacatgcccggctacaagctgaccatgctgcccgacgagatcgtcaaaagctacacg
ctgcaggaaggccgcaactgcccttccctgtcgctgtacatcacgctggacgaagccacg
ctggagatcaaggacagcgtgacccggctggagcaggtgcccatcgtcagcaacctgcgc
cacgacgtgctggacagcactttcaccgaggccttttttgaagccgcgcaaaccacccct
cccaccggcgttgagtggggcgtggagctgagctttttgcaccgcctggccaaacacctg
aaggcgcagcgcgaagtcgcacgcggcaagcccgagaacttcaaccggcccgattacaac
ttccgcctggacaaccccacgggtgccgagccccagggcaacgaggccgtcagcatcagc
acccgccagcgcggcgcgccgctggatttgatcgtggccgaggcgatgattctggccaac
agcacctggggccagtggctggccgagcacggtgtgcccggcatttaccgcagccaggcg
agcctggcgcccggcgtgaaggtgcgcatgggcaccaaggccttgccgcatgcgggcctg
ggcgtgaaaagttatgcctggagcacctcgccgctgcgccgctacaccgacctggtcaac
cagtggcaaatcattgcctgtgcgcgccacggccgcacggccgcgctggctgcccccttc
aagcccaaagacgccgagctgttttccatcatctcgggttttgatgcggcctacagcgcc
tacaacggtttccaggccggtatcgagcgctactggacgctcaaatacctgcagcaaaac
aacatcaccgagctcaccgccaccgccttcaaggacaacctggtgcgcgccgacgagttg
ccactggtgctgccggccgtgggtgcgcagggcctgccgcgcggcgcgaaagtgcgcgtc
aagctgggcgagatcgacgagatcacgctggatatttcaggcacggtgatcgagcggctg
gatgtcgacatcgacgagtcgccggacccgctgggcgaggaagacggcgagtccgagatg
gcggccggcccgatctcgattgccgtcgatgtcaatgagccacaaaccgatgccgccgct
gcggccccggtggcaggttga
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