KEGG   Polaromonas sp. SP1: DT070_05040
Entry
DT070_05040       CDS       T05689                                 
Name
(GenBank) ligase-associated DNA damage response DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
pos  Polaromonas sp. SP1
Brite
KEGG Orthology (KO) [BR:pos00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pos03400]
    DT070_05040
Enzymes [BR:pos01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     DT070_05040
    5.6.2.6  RNA 3'-5' helicase
     DT070_05040
DNA repair and recombination proteins [BR:pos03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    DT070_05040
SSDB
Motif
Pfam: WH_Lhr DEAD_assoc DEAD Helicase_C ResIII
Other DBs
NCBI-ProteinID: AYQ27448
LinkDB
Position
complement(1064699..1067428)
AA seq 909 aa
MSQNTAVKKALAEWFAARGWKPFKFQRDVWKAIADGESGLLHATTGAGKTYAVWLGALMA
FMPAAKAGIGRVAPELIANTGRRRNIPAQALTVLWITPMRALAADTLRALQQPLEILNGL
RRDDGSPLLAAWTAGARSGDTAAAERSAQNQRLPTVLVTTPESLSLLLARADAKEVLGSV
KMVVVDEWHELLGNKRGVQVQLALARLRRWNPALSTWGMSATLGNLQEAMQTLLGHTGGT
LVQGQVPKKLVVDSLLPSRAERFPWGGHLGLTMLPQVIAEIAGSSTTLVFTNTRSQSEIW
YQALLEAKPEWAGLIALHHGSLDREVREWVEAGLKSGELRAVVCTSSLDLGVDFLPVERV
LQIGSPKGVARLLQRAGRSGHAPGRPSRITLVPTHSIEIVEGAAARAAIAAGHIEARTSP
LQPLDVLVQHLVTVALGGGFVPDALYEEVRGTAAYAQLSRESWEWCLSFVRQGGPSLAAY
PDYRRAVPDEEGVWRVPDARLARRHRMNIGTIVSDASMSVQYLGGGKIGSVEESFAARLK
PGDCFLFGGRLLELVRIHDMTAWVRRASGKRPAVPRWNGGRMPLSTTLADAVVQQLALPG
EGRYDTPELQCVRPLLDIQQQWSALPTPQTLLAETLKTREGWHLFLYPFAGRHVHLGLAN
LIAWRVAQHAPRTFSIAVNDYGFELLCATEVDWPAVLPQVLVAGHDDVGRDAIAAEGAEG
GGHTALLHEVLQSLNASELAQRRFREIARVSGLIFQGYPGEKRSNKQLQASSSLFWEVFR
KYDPANRLLMQAEQELLAQELEIGRLRSSLARMNTQQLVLKALERPTPFAFPLMVELFRE
KLTNENLADRISRMVDQLEKAAGGAMLAGDVERVKGTLAFGQEGASSGGGKGTSRPRRER
KPSRPLPLL
NT seq 2730 nt   +upstreamnt  +downstreamnt
atgagccagaacactgcggtgaaaaaagcactggcggagtggtttgctgcgcgtggctgg
aagcccttcaaattccagcgcgatgtgtggaaggccattgccgacggcgagtctggcctg
ctgcatgccaccaccggcgccggcaagacctatgcggtgtggctgggtgctttaatggct
tttatgcctgcagccaaggcggggattgggcgagtagctcctgaattaatagcaaacacc
ggacgcagaagaaacatcccggcccaggccttgaccgtcctgtggatcacgccgatgcgc
gcgcttgccgccgacacgctgcgcgcattgcaacagcccctggaaattctgaacggcctg
cgccgcgatgacggctcgccgctcctcgccgcctggactgccggcgcacgcagcggagac
accgcggccgctgaacgttcggcgcaaaaccagcgcctgccgactgtgctggtcaccaca
ccggaaagcctgtcgctgctgctggcgcgtgcggatgccaaagaggtgctgggcagcgtg
aagatggtcgtcgtcgatgaatggcatgaactgctgggcaacaagcgcggcgtgcaggtg
caactcgccctggcccgcttgcgccgctggaatccggcgctcagcacatggggaatgtcg
gcgacgttgggtaatttgcaagaggcgatgcaaacattgctcggccacaccggcggcacc
ttggtccaaggccaggtgcccaagaagctcgtcgtcgattcactgctgccaagccgcgcc
gagcgctttccctggggcgggcacctggggctgaccatgctgccgcaggtgattgcagaa
atcgccggcagcagcaccacgctggtcttcaccaacacgcgctcacagtcggagatctgg
taccaggcgctgctggaagccaaacccgaatgggccggtttgatcgcactgcaccacggc
tcgctcgaccgcgaagtgcgcgaatgggtcgaggcaggcctgaagagcggcgaactccgc
gccgtggtctgcacctccagtctcgatctgggcgtggacttcctgccggtggagcgtgtg
ctgcagatcggctcacccaaaggcgtcgcgcggctgctgcagcgcgccgggcgctccggt
cacgcgcccggcaggccctcgcgcatcacgctggtgcccacacacagcatcgagatcgtg
gaaggcgccgcggcgcgcgccgccatcgcggccggccatatcgaggcacgcacctcgccc
ctgcagccgctcgatgtcctggtgcagcacctcgtcacggtggcgctgggtggcggcttt
gtgcccgacgcgctgtatgaagaagtgcgcggaacagccgcctatgcccagctctcgcgc
gaaagctgggaatggtgcctgtcctttgtccggcagggcgggccttcgctggcggcctat
ccggattaccggcgcgccgtgccggatgaagaaggcgtctggcgcgtgcctgacgcgcgg
cttgcgcggcgccatcgcatgaacatcggcaccatcgtcagcgacgccagcatgtcggtg
cagtacctcggcggcggcaagatcggcagcgtcgaagaaagttttgcggccagactgaag
cctggcgactgttttttgttcggcggccgtctgctcgagctggtgcgcatccacgacatg
acggcgtgggtgcggcgcgccagcggcaagcggcccgcggtgccgcgctggaacggcggg
cgcatgccgctgtcgaccacgctggccgatgcggtggtccagcagctcgcgctgccaggg
gagggccgctacgacacgcccgagctgcagtgcgtgcggccgctgctcgacatccagcag
cagtggtcggcgctgccgacaccgcagacgctgctggccgagacattgaagacacgtgaa
ggctggcacctgtttctgtatccgtttgcaggccgccatgtgcacctgggcctggccaac
ctgatcgcctggcgcgtggcccagcatgcaccgcgcaccttctccatcgcggtcaatgac
tacggctttgagttgctctgcgcgaccgaggtcgactggcctgcggtgttgccccaggtg
ctcgtggcgggccacgatgacgtggggcgcgatgccattgcggctgaaggtgctgaaggc
ggcgggcacacggcgctgttgcatgaggtgctgcagagcctgaacgccagcgaactggcg
cagcgccgctttcgcgaaatcgcgcgcgtgtcgggcctgatcttccagggctatccgggt
gaaaagcgcagcaacaaacaactgcaggcttcgtcgtccctgttctgggaagtgttccgc
aagtacgacccggccaaccggctgctgatgcaggcggagcaggagctgctggcgcaggag
ctggaaatcggccgcctgcgcagcagcctggcgcgcatgaacacgcagcaactggtgctc
aaggcgctggagcggccgacgccgtttgcctttccgctgatggtggagctgtttcgcgaa
aagctcaccaacgaaaatctggccgaccgcatctcgcgcatggtcgatcagttggagaaa
gccgccggcggcgcgatgttggccggcgatgtcgagcgcgtcaagggaacgctggcattc
gggcaggaaggcgcttcttcgggcggcggcaaaggcacaagccgcccgcgccgtgaacgt
aaaccctccaggccgctgccgctgttgtga

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