Polaromonas sp. SP1: DT070_08610
Help
Entry
DT070_08610 CDS
T05689
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pos
Polaromonas sp. SP1
Pathway
pos03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pos00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DT070_08610 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pos03021
]
DT070_08610 (rpoB)
03400 DNA repair and recombination proteins [BR:
pos03400
]
DT070_08610 (rpoB)
Enzymes [BR:
pos01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DT070_08610 (rpoB)
Transcription machinery [BR:
pos03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DT070_08610 (rpoB)
DNA repair and recombination proteins [BR:
pos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DT070_08610 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AYQ28071
LinkDB
All DBs
Position
1798501..1802613
Genome browser
AA seq
1370 aa
AA seq
DB search
MAYSYTERKRIRKSFGNRESVLTVPYLLQMQKDAYTAFLQADRAPQKRTIEGLQAAFDNA
FPIVSHNGFVEMKFIEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSKV
VKEVKEQEVYMGEVPLMTDKGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS
ARIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLNPESILANFFVFDNFRLM
DSGAQMEFVAERMRGEVARFDITDKNGKVVVAKDKRITVRHTRELEQSNTTTISVPEDFL
VGRVVAKNIVDAETGEIIAKANDELTEVLLKKLRVAGVQDLQVLYTNELDQGAYISQTLR
ADETADEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNARVGRD
SSTGPMVMTNEDILAVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRTGLARIE
KAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLSEITHKRRVSA
LGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYR
RVVDSKITDQIDYLSAIEEGKYVIAQANALLDDAGKLTGDLVSARENGESVLVGAERIQY
MDVSPAQIVSVAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKAFVGTGIERVSAVDS
GTVVTANRGGVVDYVDATRIVVRVNDAEALAGEVGVDIYNLIKYQRSNQNTNIHQRPIVK
MGDKLAKGDVIADGASTDIGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYTSIH
IEELVVMARDTKLGSEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDTLVGKVTPKGE
TTLTPEEKLLRAIFGEKASDVKDTSLRVSQGSQGTVIDVQVFTREGIVRDKRAQQIIDDE
LKRFRLDLNDQLRIVEADAFDRIEKLLNGKIANGGPKKLAKGTKIDKAYLADVEKYHWFD
IRPADDEVATQLESVKNAMEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRR
LQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPCDIVLNPLGVPSRMNVGQVLEVHLGW
AAKGLGQRIGDMLQAETKVAELRKFMDTLYNKSGRTEELGKLSDTDVLEMASNLATGVPF
ATPVFDGASEEDIMTMLKLAYPDDIAKAKGLTATRTQAQLYDGRTGDQFERTTTVGYMHV
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLT
VKSDDVQGRTKVYESIVKGEHAITAGMPESFNVLVKEIRSLGIDIELERS
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atggcctattcctataccgaacgtaaacgcatccgcaaaagcttcggcaaccgcgaaagc
gtgttgactgttccctatttgctgcaaatgcagaaagacgcgtacacggcgttcctgcaa
gccgaccgcgccccccagaagcgcaccattgaaggcctgcaggcagcgtttgataacgca
ttccccatcgtctcgcacaacggctttgtcgagatgaagttcatcgagtacaacctggcc
aagcccgcattcgacgtgcgtgaatgccagacccgtggactcacattcgcctcggctgtg
cgcgccaaggtgcagctgatcatttatgaccgcgaatcttccacgtcgcagtccaaggtg
gtcaaggaagtgaaagagcaggaagtctacatgggcgaagtgccgctcatgaccgacaag
ggctcgttcgtgatcaacggaaccgaacgcgtgatcgtgtcccagttgcatcgctccccc
ggcgtgttctttgaacacgacaagggcaaaacccacagctcgggcaaactgctgttctcg
gctcgcatcatcccttaccgcggctcctggctcgacttcgaattcgatccaaaagacgtg
ctgtacttccgcgtcgaccgccgccgcaagatgccggtcacgattctgctcaaggccatc
ggcctgaacccggaatccatcctcgcgaacttcttcgtgttcgacaacttccgcctgatg
gacagcggcgcgcagatggaattcgtcgccgagcgcatgcgcggcgaagtggcccgtttc
gacatcaccgacaagaacggcaaggtcgtcgtcgcgaaagacaagcgcatcacggttcgc
catacgcgtgagcttgagcaaagcaacaccaccacgatcagcgtgccggaagacttcctg
gtcggccgtgtggtcgccaagaatatcgtcgacgccgaaaccggtgaaatcatcgccaag
gccaatgatgaactgaccgaagtgctgctgaagaagctgcgcgtggccggcgtgcaggac
ctgcaggtgctgtacaccaatgaactcgaccagggcgcgtacatctcgcaaaccctgcgc
gccgatgaaacggccgacgaattcgccgcacgcgttgccatctaccgcatgatgcgtccc
ggcgagcctccgacagaagacgccgtgcaagccctgttccagcgcttgttctacaacccg
gacacctacgacctgtcgcgcgtgggtcgcatgaagttcaacgcccgcgtgggccgcgac
tcttccacgggccccatggtcatgaccaacgaggacatcctcgccgtcgtcaagatcctg
gttgacctgcgcaacggcaacggcgaagtcgatgacatcgatcacctcggcaatcgccgc
gtgcgttgtgtcggcgaactcgccgaaaaccagtaccgcaccggtctggctcgtatcgag
aaagccgtgaaagagcgtctgggccaggccgagcaagagccgctgatgcctcacgacctg
atcaacagcaagccgatttccgccgccctgaaggaattcttcggcgcatcgcagctgtcg
cagttcatggaccagaccaacccgctgtccgaaatcacccacaagcgccgtgtttcggcc
cttggcccgggcggcttgacccgcgaacgcgctggctttgaagttcgtgacgtgcacgtg
acccattacggccgcgtctgcccgattgaaacgcctgaaggaccgaacatcggcctgatc
aattcgctggccctgtacgcccgcctcaacgagtacggtttcatcgaaaccccgtaccgc
cgtgtggtggacagcaagattaccgaccagatcgactacctgtcggccatcgaagaaggc
aagtacgtgatcgcccaggccaatgccctgctggacgacgcaggcaagctgaccggtgac
ctggtttccgcccgtgaaaacggcgaatccgtcctggtcggcgcagaacgcatccagtac
atggacgtgtcgcccgcgcagatcgtttcggtggccgcatcgctggtgccattcctggag
cacgatgatgccaaccgcgcgctgatgggcgccaacatgcagcgccaggccgtgcctgtg
ctgcgtcctgaaaaagccttcgtcggcaccggcatcgagcgcgtttccgcggtcgactcc
ggcaccgtggtgacggccaatcgcggcggtgttgttgactacgtcgacgctacccgcatc
gtggtgcgtgtgaatgatgcggaagccctggccggcgaagtcggtgtggacatctacaac
ctgatcaagtaccagcgctccaaccagaacaccaacatccatcagcgccccatcgtcaag
atgggcgacaagctggccaagggcgacgtgatcgccgacggcgcatcgacggacatcggc
gagctggccctgggccagaacatgctggtggctttcatgccctggaacggctacaacttc
gaggattcgatcctgatctccgagcgcgtggtggctgaagaccgctacacctcgattcat
atcgaagaactcgtcgtgatggcccgtgacaccaagctgggttctgaagaaatcacgcgc
gacattcccaacctgtccgagcagcagctcaaccgccttgacgagtccggcattatttat
gtcggtgccgaagtccagccgggcgacacgctggtcggcaaggtcacgcccaagggcgag
accacgctgacgccggaagaaaagctgttgcgcgccatcttcggcgaaaaagccagcgac
gtgaaagacacctcgctgcgcgtgagccagggctcgcaaggcaccgtgatcgacgtgcag
gtcttcacccgtgaaggcattgttcgcgacaagcgcgcccagcagatcatcgacgacgaa
ctcaagcgtttccgcctggacctgaacgaccagctgcgcatcgtggaagccgacgcgttc
gaccgtatcgaaaagctgctcaacggcaagattgccaacggtggcccgaagaagctggcc
aaaggtaccaagatcgacaaggcttacctggccgacgttgagaagtaccactggtttgac
atccgccctgcggacgacgaagtcgctacgcaactggaaagcgtgaagaacgccatggag
cagacgcgccacagcttcgacctggctttcgaggaaaagcgcaagaagctcacgcaaggc
gacgagctgccggccggcgtgctgaagatggtcaaggtctacctggccgtcaagcgccgc
ctgcaacccggcgacaagatggccggccgtcacggcaacaagggtgtggtctccaagatc
gttccggtcgaagacatgccctacatggccgacggcacaccgtgcgacatcgtgctgaac
ccgctgggcgtgccttcgcgcatgaacgtgggccaggtgcttgaggtccatctgggctgg
gccgccaagggcctgggccagcggatcggcgacatgctgcaggcagaaaccaaagtggcc
gagctgcgcaagttcatggacacgctgtacaacaagtccggccgcaccgaagagctgggc
aagttgtcggataccgacgtactcgagatggccagcaacctcgccaccggcgtgccgttc
gcgaccccggtgttcgacggcgcttcggaagaagacatcatgaccatgctcaagctggct
tacccggatgacatcgccaaggccaagggcctgacggcgacgcgcacccaggcccagctg
tacgacggacgcaccggcgaccagttcgagcgcacaacgaccgtcggctacatgcacgtc
ctgaagcttcaccatctggtggacgacaagatgcacgcccgctcgaccggcccgtattcg
ctggttacgcagcagcccctgggcggcaaggcacagttcggtggccagcgtttcggcgag
atggaagtctgggcgctggaagcctatggcgcctcctacacgctgcaggaaatgctcacc
gtcaagtccgacgacgtgcaaggccgcaccaaggtgtacgaaagcatcgtcaagggcgag
cacgcgatcacggcgggcatgcccgagtcgttcaacgtgctggtcaaggaaatccgttcg
ctcggtatcgacatcgagctggaacgcagctaa
DBGET
integrated database retrieval system
