Polaromonas sp. SP1: DT070_11855
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Entry
DT070_11855 CDS
T05689
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pos
Polaromonas sp. SP1
Brite
KEGG Orthology (KO) [BR:
pos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pos03032
]
DT070_11855
03400 DNA repair and recombination proteins [BR:
pos03400
]
DT070_11855
Enzymes [BR:
pos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DT070_11855
DNA replication proteins [BR:
pos03032
]
Prokaryotic type
DNA Topoisomerases
DT070_11855
DNA repair and recombination proteins [BR:
pos03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DT070_11855
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AYQ28654
LinkDB
All DBs
Position
complement(2505910..2507121)
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AA seq
403 aa
AA seq
DB search
MPGARTTSSSAKVFSTKAPPILQGSGLVYVSDDMPGLTRLKSGKGFRYRNAGGQAIRDPD
EIRRIQKLAIPPAYTRVWICPKPNGHLQATGYDARGRKQYRYHADWQERRNDSKFERLQA
FGHALPRIRARVARDLAPRRNAPVSRSLVLATLVRLLDTTFVRVGNDEYARENGSYGLTT
LRNPHAGVRGKTLQLRFRGKSGVMQDLKVDDPKVAAVVRRCQQLPGQLLFQYESVEGEAT
ELRAVGSSDVNDYLAEITRSKNASPDSSDHFTAKDFRTWHGTVQALELTRLACSTSDDPK
AGGYSAKAVLQEVARLLGNTPAVCKKSYIHPAVMALGGSLAQDAGAMGELWPQLESGKKL
RRLYAAEHRLMGFLDKHQRALKTQARAAGKASGKAPKKSKPAG
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgccaggcgcacgcaccacttcgtcttctgccaaagttttttccaccaaagcaccgccc
atcctgcagggcagcggccttgtgtatgtgagcgacgacatgcccgggctgacccggctt
aaaagcggcaagggctttcgttaccgcaacgccggcggccaggcgatcagggacccggac
gagatccgccgcatccagaagctggcgattccgccggcctatacgcgcgtgtggatctgc
cccaagccaaacggccacctgcaggccaccggctacgacgcgcgcggccgcaagcaatac
cgctaccacgccgactggcaggaaagacgcaacgacagcaagtttgagcggctgcaggcc
tttggccatgccctgccgcgcatacgcgcccgtgtggcacgcgacctggcgccgcgccgc
aatgcaccggtgagccgcagcctggtgctggccacgctggtgcgcctgctggacaccacc
tttgtgcgcgtcggcaacgacgagtacgcgcgcgagaacggctcctacggcctgaccacc
ttgcgcaacccgcacgccggcgtgcgcggcaaaacgctgcagctgcgctttcgtggcaaa
agcggcgtgatgcaagacctgaaggtggacgacccaaaagtcgcggccgtggtgcggcgc
tgccagcagttgccggggcagttgctgtttcagtatgagagcgtggaaggcgaagccacc
gaactccgtgccgtcggttcgagcgacgtcaacgactacctcgcggaaatcacccggagc
aaaaacgccagccctgacagcagcgatcacttcaccgccaaggatttccgcacctggcac
ggcaccgtgcaggcgctggaattgacgcggctggcttgcagcaccagcgacgaccccaag
gccggcggctacagcgccaaggcggtgctgcaggaagtcgcccgcctgctcggcaacacc
ccggccgtctgcaagaagtcctacatccacccggccgtgatggcgctgggcggcagcctg
gcgcaggacgcgggcgcgatgggcgagctgtggccgcagctggagtccggcaagaagctg
cgccggctgtatgcggccgaacaccggctgatgggctttcttgacaaacaccagcgcgca
ctgaaaacccaggcgcgggcggccggcaaggcttcgggcaaggcgccgaagaaatcgaaa
cccgccggctaa
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