Polaromonas sp. SP1: DT070_14810
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Entry
DT070_14810 CDS
T05689
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pos
Polaromonas sp. SP1
Brite
KEGG Orthology (KO) [BR:
pos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pos03009
]
DT070_14810
Enzymes [BR:
pos01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
DT070_14810
Ribosome biogenesis [BR:
pos03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
DT070_14810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
RrnaAD
TRM5-TYW2_MTfase
Methyltransf_31
Methyltransf_25
TRAM
Methyltransf_11
MTS
TPMT
PrmA
PCMT
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
AYQ29181
LinkDB
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Position
3112965..3114425
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AA seq
486 aa
AA seq
DB search
MTEESQNKQPPTAADYPPDVLEVESLDIEAQGIAHRADGKVVFIEGALPFERVTANVYRK
KSSFEKAVVMAIHSESPQRVRPACPHFGMHTGACGGCKMQHLHASAQVAVKQRVLEDNLQ
HIGKLKADNLLRPIEGPAWGYRYRARLSVRYVRKKGAVLVGFHERKSAYVADMSECHVLP
RHVSDMLLPLRALIAGMDAKETIPQIELACGDEVTAMVLRHMEPLSEGDLARLRTFAAAN
PGLQWWLQPGGLETVKLLDDAVQELNYGLPEFGITMPFKPTDFTQVNPHINQVLVSRALR
LLAVQPDERVIDWFCGLGNFTLPLATRAREVLGIEGSEVLVTRSRENFERNKAAAHTRHA
LAATKFVARNLFEMTPAMLVKDGSADKWLVDPPREGAFELFKSLAALHQQLASGVPCDDG
ENQQSLALDGWTPPKRIVYVSCNPATLARDAGVLVDSGAWRCTAAGVVNMFPHTAHVESI
AVFERV
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgacagaagaaagccagaacaagcagccccccacggctgcagactacccgccggatgta
cttgaggtcgagtcgcttgacatcgaagcgcagggcatcgcccacagggccgacggcaag
gtggtgtttattgaaggcgcgctgccgtttgagcgggtgacggccaatgtgtaccgcaag
aagagcagctttgaaaaagccgtggtgatggcgatccacagcgaatcgccccagcgcgtg
cgcccggcctgcccgcatttcggcatgcacaccggcgcttgcggcggctgcaagatgcag
cacctgcatgcgagtgcacaggtggccgtgaagcagcgcgtccttgaagacaacctccag
cacatcggcaagctcaaggcggacaacctgctgcggcccatcgaggggcccgcgtggggc
taccgttaccgcgcgcgcctgtcggtgcgttatgtgcgcaagaagggcgcggtgctggtc
gggtttcacgagcgcaaaagcgcttatgtggccgacatgagcgaatgccatgtgttgccc
cggcatgtcagcgacatgctgcttccattgcgcgcgctgatcgccggcatggacgccaag
gaaaccattccacagatcgagctggcctgcggcgatgaggtaacggcgatggtgttgcgc
cacatggagccgctcagcgagggcgacctggctcggttgcgcacgtttgctgcggcgaac
cccggccttcagtggtggctgcagccgggcgggctggagaccgtgaagctgctcgatgac
gccgtgcaggaattgaactacggcttgcccgagttcggcatcaccatgcccttcaagccg
accgatttcacccaggtgaacccgcacatcaaccaggtgctggtgtcgcgtgcgctgcgt
ctgctggcggtgcagcccgatgaacgggtgatcgactggttttgcggcctgggcaatttc
acgctgccgctggccacgcgtgcccgcgaggtgctgggcattgaaggcagcgaagtcctg
gtgacgcgttcacgtgagaattttgaacgaaacaaggctgcagcccatacgcgtcatgca
cttgctgctactaaatttgtagcgcgcaacctgtttgaaatgacgcccgccatgctggtg
aaagatggctcggccgacaaatggctggtcgatcccccacgcgagggtgcgtttgagtta
ttcaaatccctggcggccttgcatcagcaactcgccagcggtgttccgtgcgacgacggc
gaaaaccagcagagcctggcgctggacggctggacgccgcccaaacgcattgtttacgtg
agctgcaaccccgccaccctggcgcgggatgccggcgtgctggtggacagcggtgcctgg
cgttgcacggccgccggcgtggtgaacatgttcccgcacaccgcgcacgtggagtcgatt
gcggtttttgagcgggtctga
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