Polaromonas sp. SP1: DT070_15530
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Entry
DT070_15530 CDS
T05689
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
pos
Polaromonas sp. SP1
Brite
KEGG Orthology (KO) [BR:
pos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pos03400
]
DT070_15530
Enzymes [BR:
pos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DT070_15530
DNA repair and recombination proteins [BR:
pos03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
DT070_15530
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Cas_Cas4
Focadhesin
Motif
Other DBs
NCBI-ProteinID:
AYQ29308
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Position
3261812..3264385
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AA seq
857 aa
AA seq
DB search
MPPAQIADTTLAPPDALCWQQAVAQLAATLQARGVHPAEAVVLLPYAQLIQQARQAWAAQ
AGATFFVPRFETTMNWASGLGGTLGLFAPSGDDLRMDMAVDMLTAASLLARAGLGGQQDA
LAGRLVEAAWSLAGVAAAVMPARRQAWSERLALTLGAGLDSPALALEAAVGRIALAWAAN
SAYPTDRLFQAQPLLFAVLEGFQADPLTEALKAHFGERAVSIPLCIPLVDSPQPPALHAA
QDAEDEAGRAAACVLAHLAQGRSPVALIAQDRQLTRRVGAMLAERGIAMRDETGWKLSTT
RAAASLMSLLRAMPWDASTDAVLDWLKNAPAFDGAMLTTAETELRRAGVRAWRDLPDFPE
EGIVPPAFAATGPLARQVNALRTPFARARPLAMWLRDLRTALQSAGQWDALAQDEAGQTV
LDVLRLHEGAEAEFEASPVMRLHDFTQWANQALEGGKFSPAHPPAEQVVILPLPQLLGRP
MQAVVLPGCDEIRLPVSPEPTGPWTPGQRELLGLASRETLAAAQRQAWQYALRMPHVDVL
WRTSESGEHLIPSGFVQELLLAQDDAEGAPPVAADPRVLRAVDIQPTPHPFPTGEALPVT
RLSASAYEDLRRCPYRFFALRQLKLQESEELESELGKRDFGNWLHNLLHHFHEALKTASA
QDLPGRIAMINIAADTATQELALSESEFLPFAAAWPGVREGYLKWLAEHEATGATFEAGE
AWREVPLGSITLLGKLDRIDRQADGHALLIDYKTEPRSTTAERIKNGQEDTQLAFYAALM
TDDTLAAAYVNLGEKEPTKTYEQPDIVGLRDELIDSILTDMARIARGAALPALGEGKACD
YCAARGLCRKDFWSLDE
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgccacctgcccagattgccgacaccaccctggcgccgcctgatgcgctttgctggcag
caggccgtggcgcaactggccgcaacgctgcaggcgcggggcgttcacccggctgaggcc
gtcgtgctgctgccgtatgcccagctgatccagcaggcgcgccaggcctgggccgcgcag
gccggggcgacgttttttgtgccgcgttttgaaactaccatgaactgggccagcgggctg
ggcggcacgctgggcctttttgcgccctcgggcgacgacttgcgcatggacatggcggtc
gacatgctgaccgccgcgtctttgctggcgcgcgccgggctgggcggccagcaggatgcc
ctggccgggcgcctggtggaagcggcctggagcctggcgggcgtggccgccgccgtcatg
cctgcgcggcgccaggcctggagcgagcgcctggcactgacgctgggcgcggggcttgac
tcgcccgcgctggcgctggaagccgccgtgggccggattgcgctggcctgggccgccaac
tccgcttaccccacagaccgccttttccaggcgcagcccttgctgtttgctgtgctcgaa
ggcttccaggccgacccgctcaccgaggcgctcaaggcacatttcggcgagcgcgccgta
tccatcccgctgtgcattccgctggtggacagcccgcagccgccggcgctacacgccgcg
caggatgccgaagacgaggccgggcgtgccgccgcctgtgtgctggcgcacctggcgcaa
ggccgcagcccggtggcgctgattgcgcaagaccggcagctcacgcgccgcgtgggcgcc
atgctggccgagcgcggcatcgccatgcgcgatgaaaccggctggaagctttcgaccaca
cgcgccgccgccagcctgatgagcctgctgcgcgcgatgccctgggacgcctcgaccgac
gccgtgctggattggctgaagaatgcgccggcctttgacggcgccatgctgactaccgcc
gaaaccgagctgcgccgggccggcgtgcgcgcctggcgcgacctgccggactttccggaa
gaggggatcgtgccgcccgcatttgccgcaaccgggccgctggcgcgccaggtcaacgcg
ctgcgcacgccttttgcccgcgcgcgccctttggcgatgtggctgcgcgacctgcgcacc
gccctgcaatcggccggccaatgggatgcgctggcccaagacgaagccggccagacggtg
ctcgacgtactgcgcctgcacgaaggcgccgaggctgaatttgaagcctcgccggtgatg
cggctgcacgacttcacccagtgggccaaccaggcgctggagggcggcaagttttcccca
gcgcatccgcccgccgagcaggtggtgatattgccgctgccgcaattgctgggccggccc
atgcaggcggtggtgctgccaggctgcgacgaaatccgcctgccggtttcgcccgagccc
accggcccctggacaccgggccagcgcgaactgctgggcctggcttcgcgcgaaaccctc
gccgccgcccagcgccaggcctggcaatacgcgctgcgcatgccgcatgtcgatgtgctg
tggcgtaccagcgaatcgggcgagcacctgattcccagcggatttgtgcaggagcttttg
ctggcccaggatgacgcggaaggggcgccccccgttgccgccgacccgcgcgtgctgcgc
gccgtcgacatccagcccacgccgcacccctttccaacaggtgaggccttgcccgtcacc
cgcctgtcggccagcgcgtatgaagacttgcggcgctgcccctaccggttttttgcgttg
cgccagctcaagctgcaagagtccgaagagctcgaaagcgagctcggcaagcgcgacttc
ggcaactggctgcacaacttgctgcaccacttccatgaagcattaaaaacggcttcagcc
caggacctgcctgggcgtatagctatgattaatatagcagccgacaccgccacgcaagag
ctggcgctgagcgagagcgagtttttaccctttgccgctgcctggccgggcgtgcgcgag
ggctacctgaaatggctggccgagcacgaagccaccggcgccacctttgaggccggcgaa
gcctggcgcgaagttccgctgggcagcatcacgctgctgggcaagctggaccgcatagac
cgccaggccgacggccacgcgctgctgatcgactacaagaccgagccgcgcagcaccacg
gcggagcgcatcaagaacggccaggaagacacccagctggctttttatgccgccctgatg
acggacgacacgctggccgccgcctatgtgaacctgggtgaaaaagagccgaccaaaact
tacgagcaacccgacatcgttggtttgcgcgacgagctcatcgacagcatcctgaccgac
atggcacgcatcgcgcgcggtgcggcgctgccggcgctgggcgaaggcaaggcctgcgac
tactgcgcggcgcgcggtttatgccgcaaagacttctggagcctggatgaataa
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