Polaromonas sp. SP1: DT070_16835
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Entry
DT070_16835 CDS
T05689
Name
(GenBank) type IV secretion protein Rhs
Organism
pos
Polaromonas sp. SP1
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GFIT
Motif
Pfam:
RHS_repeat
TEN_YD-shell
Big_3_5
Big_7
Motif
Other DBs
NCBI-ProteinID:
AYQ29532
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Position
3543613..3546216
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AA seq
867 aa
AA seq
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MSSPSPIRAFTAWLSRLALLIIMAPAMAIAATPTTTALSSSAGTAPVGQSITLTATVTGA
SPTGTVTFKDGATTVGSGAVTAGVATLNSSALALGSHTLTAEYAGDANNDPSTSAGVTVV
INTGTLTWQFGYDAMGRPTTVLDPNGLASYTYYDRLGRPIQTQQPANTGSATPTTTSFAY
NANDSLTQVTDPRSLNTSYTPNGLGDVTAQTSPDTGASQYTYDANGNVLTKTDARGKLTQ
YAYDNLDRLKRVQYPTGTDTLIEYDGGSTPTPAAVGELTKITDASGQAVYTYDSMGRKTG
KTQTTGAKTFTVGYTWGDTGTALDKLTAITYPSGTKINYSYNAYGDVSGITVNPPNANGV
GTNTGTSLPMISAITQNAESKLTGWTWASAKTQAIAYDGNGEIAAYNLGDSTGTGSAAGI
RRTVTRDSAGRITGYTHISNGTAVPALDQSFGYDNLNRLISATQNGTAIQYSYDATGNRT
AKAVSGTSYPNTISATSNKLTQTQDAGGTATIQHDAAGNITSDGTNTYTYTDRGRLATMI
NAGGTVSYSYNALELRVAKTGPTALVPTGATYYVYDESGKLLGEYDVNGTPLYETIYLGL
PVGVIKQTGTAAGGNIAIGLYNVSTDQIGAPRIITRQLDEAVVWRWDTAEVFGATAPDQN
PSGSGTFNFNQRLPGQVFDAESGLFQNWNREYNPRIGRYMQSDPIGLRGGINTYAYVDGN
PVVMVDPSGLAGSFVGQLGGSYVPGIGGEGNVGVFVGTYNGRLDFGFYTQGGISVGVQSP
GVSGQVGAINGDVNTIRGITKNINVSAPLACGTAMTTIDVQGKTKLVGVTVGLGSKLGGS
MTYSDTAAWSMQEAIDRMIDRLVSHRK
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtcccagccccatcagagccttcaccgcgtggctaagccgcctggcgctgctc
atcatcatggccccggccatggcaattgccgctaccccgacgaccacagcgctttccagc
agcgccggcaccgccccggtgggtcaaagcatcacgctgacggcgaccgtcacaggggcc
agccccaccggcactgtcactttcaaggatggcgcaacgacagtgggcagcggtgctgtc
acggccggcgttgccactttgaacagcagcgctttagctctgggcagccacacgctgacc
gctgagtacgcaggcgacgccaataacgatccgtcaacatcagccggtgtcactgtggtc
atcaacacaggcacattgacttggcaattcggctacgacgccatgggcaggcccaccacc
gtactggaccccaatggcctggccagctacacctactacgaccgccttggtcgtcccatc
cagacccagcagccggccaacaccggcagcgccaccccgaccaccaccagctttgcctac
aacgccaacgacagcctgacccaggtcaccgacccgcgcagcctgaacaccagctacacc
cccaacggcctgggtgacgtcaccgcacaaaccagtcctgatacgggagcgagccagtac
acctacgacgccaacggcaacgtactgaccaagaccgacgccagaggcaaactcacccag
tacgcctacgacaacctggaccgcctgaagcgtgtccagtaccccacaggcacagatacc
ctgattgaatacgatggcggtagcacccctacgcctgctgcagtgggtgagctcaccaag
atcacagatgccagtggccaggccgtctacacctatgacagcatgggtcgcaaaacgggc
aagacccagaccacaggagccaagaccttcacggtcggctacacctggggcgacacgggt
acagcgctggacaagctgaccgcgatcacctacccgagcggaacaaagatcaactacagc
tacaacgcctatggcgatgtatccggaatcacggtcaacccacccaatgcgaatggcgtg
ggcaccaataccggaaccagcctgccgatgatcagcgccatcacccagaacgctgaaagc
aagcttaccggctggacctgggccagcgccaagacgcaggccattgcgtatgacggcaat
ggcgaaatagcggcgtacaacctgggcgattcaacgggtactggatcagcagcaggcatc
cgccgcaccgtcacccgtgacagtgcagggcgcatcactggctatacgcatatcagcaat
ggcacagccgtacccgcgctggaccaaagctttggctatgacaacctgaaccgcctcatc
agcgccacccaaaacggcacggccattcaatacagctacgacgccactggcaaccgcacg
gccaaggcagtgagcggaaccagctatccaaacaccatctcggcaaccagcaacaagctg
acccagacgcaggatgcgggtggtacggcgaccatccaacacgatgcggcgggcaacatc
acgagtgatggcaccaacacttatacctacactgaccgtggcaggctggccacgatgatc
aatgcgggcggcacggttagctacagttacaacgccttggagttgcgggttgccaagacc
ggccccacggcgctggtgccaacgggcgctacgtactacgtttatgacgagtcaggcaag
ctgctcggtgaatacgacgtcaatggaacgccgctgtatgaaaccatctacctgggttta
ccggttggggtgatcaagcagacgggtacagcagcgggtggcaacattgccattggccta
tacaacgtctcgacggatcagatcggtgcgccccgaatcatcacgcggcaattggatgaa
gcggtggtgtggaggtgggatacggctgaggtctttggtgcgacggcgccggaccagaac
ccgagtggctcgggaacgttcaactttaaccagcgcctgcctggccaggtgtttgatgct
gagagtgggctcttccagaactggaaccgggagtacaacccgcgcatagggcgatatatg
cagtctgatcctattggcctgcgcgggggcatcaacacgtatgcttatgttgatgggaat
cctgtcgtcatggttgacccatcaggattggctggcagcttcgtggggcaacttggtggg
tcctatgtacccggtatcggcggtgaaggaaatgtcggtgtgttcgtgggaacgtacaac
ggccgattggattttgggttctacacgcaaggcggcatatcagtaggtgtgcaatcgccg
ggtgtgtctgggcaggttggagccattaacggggacgtaaacacaatacgagggattacc
aagaacatcaatgtttctgcgccattggcctgcgggacggcgatgacgacgatagatgtc
cagggtaagactaaactggttggggtgacggtagggttgggttccaagctcgggggatcg
atgacttattccgacactgccgcctggagcatgcaggaggccattgacagaatgattgac
cgcctcgtaagccacagaaagtga
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