Polaromonas sp. SP1: DT070_18610
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Entry
DT070_18610 CDS
T05689
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pos
Polaromonas sp. SP1
Pathway
pos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DT070_18610 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pos03019
]
DT070_18610 (rnr)
03016 Transfer RNA biogenesis [BR:
pos03016
]
DT070_18610 (rnr)
Enzymes [BR:
pos01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DT070_18610 (rnr)
Messenger RNA biogenesis [BR:
pos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DT070_18610 (rnr)
Transfer RNA biogenesis [BR:
pos03016
]
Prokaryotic type
tRNA degradation factors
DT070_18610 (rnr)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
DUF8200
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AYQ29854
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Position
complement(3927430..3929835)
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AA seq
801 aa
AA seq
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MKTTHSHSGGSSAHSSGLLAEFEGTVSGHRDGHGFVLRDDGEADIYLPPNEMRAVLHKDR
VKARIVRHDRKNRPEGRVTEIVERSSNPIIGRLLQESGVWLVAPEDKRYGQDVLIPKGAT
GTAKSGQVVVVQLTEPPALFGQPVGRVKEVLGEIDDPGMEIEIAVRKYGVPHEFSDEALA
LARALPDAVRPADKKHRIDLTDVPLVTIDGEDARDFDDAVYCEPAKVGRGKGWRLLVAIA
DVSHYVETGSAIDIDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPNVERLCMVCDMLVN
AKGEVHAYQFYPAVMFSQARFTYTEVAAILANTRGPEAAQRKALVPHLLDLHDVYQVLLK
ERGVRGAVDFETTETQIVCDEAGRIEKIVPRTRNVAHRLIEEAMLAANVCSADFILQSKH
VGLYRVHEGPTPEKKEMLRNYLKAAGIGMTISDDPEPGEFQKIALATKDRPDAQQIHSML
LRSMQQAIYTPMNSGHFGLAYEAYTHFTSPIRRYPDLLVHRVIKAVLNKAKYQLPTLPTP
GEAEAKLSKRLASRVKEPTQKPKKASADELAWQAAGLHCSANERRADEASRDVEAWLKCK
YMREHLGEEFGGVVTAATGFGIFVTLDAMYVEGLVHITELGGEYFRFDEARQELRGERTG
IRYAIGTRVRVQVSRVDLDGRKIDFRLVTEGQDLVGRAMKDKTGGHATELPAKERGAARH
AGDERTGRADKAGKAGKKTAGKHTEGRSGSRSSSGGSSGSSSGRSSAGSERTPKSPIQAL
KAAVKKAAGNPGRKQGKKPRR
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atcaaaacaactcactcccattcgggcggatcgtccgcccattcatccggtttgctcgct
gaattcgagggcaccgtttccggccaccgcgacggccacggctttgtattgcgcgacgac
ggcgaagcggatatttacctgccgcccaatgagatgcgcgcagtgctgcacaaggaccgc
gtcaaggcgcgcatcgtgcggcatgaccgcaaaaaccggcccgaaggccgcgtgaccgag
atcgtcgagcgctcctccaacccgatcatcggccgcctgttgcaggaaagcggcgtctgg
ctggtcgcccccgaagacaagcgctacggccaggacgtcctgatccccaagggcgctacc
ggcacggccaagtccgggcaggtggtggtggtgcagctcaccgagccgcccgcgctcttc
ggccagcctgtgggccgcgtcaaggaagtgctgggcgagatcgacgaccccggcatggaa
atcgaaatcgccgtgcgcaagtacggcgtaccgcacgaattcagcgatgaagcgctggcc
ctggcccgtgccttgcctgacgcggtccgccccgccgacaagaagcaccgcatcgacctg
accgatgtgcccctggtgaccatcgacggcgaagacgcccgcgattttgacgatgccgtg
tactgcgagcccgccaaggtcggccgcggcaagggctggcggctgctggtggcgattgcc
gacgtgagccactatgtggaaaccggcagcgccatcgacatcgacgcctacgaccgcgcc
accagcgtgtactttccgcgccgcgtgatcccgatgctgccggaaaagctttccaacggc
ctgtgctcgctcaaccccaacgtcgagcgcctgtgcatggtctgcgacatgctggtcaac
gccaagggcgaagtccatgcctaccagttctacccggccgtgatgttcagccaggcgcgc
tttacctataccgaagtggcggccatcctggccaacacgcgcggccctgaagccgcgcag
cgcaaggcgctggtgccgcacctgctggatttgcacgatgtgtaccaggtgctgctcaag
gagcgcggcgtgcgcggcgcggtggactttgagaccaccgaaacgcaaatcgtctgcgac
gaggctggccggattgaaaaaatcgtgccgcgcacccgcaacgtggcccaccgcctgatc
gaagaagccatgctggccgccaacgtctgctcggccgacttcatcttgcaaagcaagcat
gtgggcctgtaccgcgtgcacgaaggcccgacgcccgagaagaaggagatgctgcgcaat
tacctgaaggcggcaggcatcggcatgaccatcagcgacgacccggaacccggcgagttc
cagaaaatcgcactggctaccaaagaccgtccggacgcgcagcaaatccactcgatgctg
ctgcgctccatgcagcaggccatctacacgcccatgaacagcggccacttcggcctggcg
tacgaggcttacacccacttcaccagcccgatccggcgttaccccgacttgctggtgcac
cgcgtcatcaaggcggtgctgaacaaggccaaataccagttgccgaccctgcccacgccg
ggtgaggccgaggccaagctgtccaaacgcctggcttcgcgcgtgaaagagccgactcaa
aaacccaaaaaagccagtgccgacgaacttgcctggcaggcggcgggcctgcattgcagc
gccaacgagcgccgcgccgacgaagccagccgcgacgttgaagcctggctcaagtgcaag
tacatgcgcgagcacctcggcgaggagttcggcggcgtcgtcacggcggccaccggcttc
ggcatcttcgtcacgctcgatgccatgtacgtggaaggcctggtgcatatcaccgagctg
ggcggcgaatacttccgcttcgacgaagcccgccaggagctgcgcggcgagcgcaccggc
atccgttacgccatcggcacgcgggtgagggtgcaggtcagccgggtcgacctggacggc
cgcaagatcgacttccggctggtgacggaaggccaggacctggtcgggcgcgccatgaag
gacaagaccggcggccatgccaccgagctgccggccaaagagcgcggcgccgcgcgccat
gccggggacgagcgtacgggcagggccgacaaggctggaaaggccggcaagaagaccgcc
ggcaaacacaccgaaggccgctccggcagccgcagcagttccggcggcagttccggcagt
agttcagggaggagcagcgcaggcagcgaacgcacacccaagtcgcccatccaggcgctg
aaggctgccgtcaagaaggctgcaggtaaccccgggcgcaagcagggcaagaagccgcgc
cggtaa
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