Polaromonas sp. SP1: DT070_20205
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Entry
DT070_20205 CDS
T05689
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pos
Polaromonas sp. SP1
Pathway
pos03030
DNA replication
pos03430
Mismatch repair
pos03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DT070_20205
03430 Mismatch repair
DT070_20205
03440 Homologous recombination
DT070_20205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pos03032
]
DT070_20205
03400 DNA repair and recombination proteins [BR:
pos03400
]
DT070_20205
Enzymes [BR:
pos01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DT070_20205
DNA replication proteins [BR:
pos03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DT070_20205
DNA repair and recombination proteins [BR:
pos03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DT070_20205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AYQ30640
LinkDB
All DBs
Position
complement(4300564..4304046)
Genome browser
AA seq
1160 aa
AA seq
DB search
MFVHLRLHTEFSVVDGTNRIDEVVAAAAADRQPALAITDLSNLFGTVKFYKETRGAGVKP
LIGADLWVQVPGKDPGAPAARLLLLVQSRQGYLNLSEIITRAWTKNVVRDQAVVKLEWLQ
ELNEGLIALSGAQGGAVGQALIQGDSARAVECALYFAGLFPHRFYLELQRAQRPDDERHV
VAAVQLAARLKLPVVATHPVQFLTYDDYEAHEARVCISEGEILGNSRRVRKFTREQYFKS
SAQMAELFADVPTALANTLEIARRCNLTLELGKPMLPDYPTPAVNGVRMPIDEYFRHASF
EGLEERLVHLYRDAAVRDKKRPEYVARLEFEINTILKMGFPGYFLIVGDFINWAKNNGCP
VGPGRGSGAGSLVAYSLKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQSNRDRVIDY
VKDKYGKEAVSQIVTFGTMAARAAIRDVGRVLDFPYGFCDGISKLIPNKPGQHITIEQAK
EQEPILAERERKEEDVRTLLELAQKLEGLTRNVGMHAGGVLIAPSRLTDFCPLYAQPGSD
SAVSQFDKDDVEAIGLVKFDFLGLATLTILEIAREFIIARHPAQKDFKFEDLPLNDRKVY
ELFGRGQTEAVFQFESIGMQRMLKDAKPDRLEDLIAMNALYRPGPMELIPTYIARKQGKE
VPEYPDPRVKAILEETYGIMVYQEQVMQTAQILGGYSLGGADLLRRAMGKKKKEEMDAQR
EVFRKGAGEGGLSLEKADEVFDLMEKFAGYGFNKSHSAAYALLAYHTAWLKVHYTAEFFA
ANMTVEMDDTDKLKVLFGDAQKMGVQFESPDINRGDYRFEPISATSVRYGLGAIKGTGQQ
AIAAIVAARKEGGPFTSLYDFCVRVDRSRLNKRTVEALIKGGAFDNLQLNRASLLASVDR
AFEFAVATEANANQGGLFDMSDSHAASTQEPPLVEAMPFGVKARLVQEKTAIGFYLSGHL
FDEVETEVRQFAKRKIEDLIDSREPQLLAAILSDLRIINGNRGKLIIFKLDDKTDVLEAS
VDEATFNANRNLLKDDELVIVQGTLQGASERFGRRFKVTQVWDLETARCKFGKYLRVAVN
GSAPDISRLVRDFPPRREMSDQGELVRGLPVRLSLRRQNGVAGATAELQLGEAAKFFPTD
AALASWMAQADRGLVQIVYE
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtccatttgcgccttcacaccgaattttcagtcgtcgacggcaccaaccgcatc
gatgaagtcgtggccgccgccgcggctgaccggcagcccgcgctggccatcaccgacctc
tccaacctgttcggcaccgtcaagttctacaaggaaacccgcggggccggcgtcaagccg
ctcataggcgccgacctttgggtgcaggtgcccggcaaagatcccggcgcgcccgccgcc
cgcctgctgctgctggtgcaaagccgccagggctacctcaatctctccgaaatcatcacc
cgcgcatggaccaaaaacgtggtgcgcgaccaggcggtggtcaagctcgaatggctgcag
gaactcaacgaaggcctgatcgccctgtcgggcgcacagggcggggctgtaggccaggcg
ctgattcagggcgacagcgcccgcgccgtggaatgcgcgctgtatttcgcgggcctcttt
ccccatcgcttttaccttgaattgcagcgtgcccagcggcccgacgatgagcgccatgtg
gtggcggccgtccagctcgcggcgcggctcaagctgccggtggtggccacgcatccagtg
cagtttttgacctacgacgactacgaagcgcacgaggcgcgcgtctgcatctcggaaggc
gaaatcctgggcaactcgcgccgcgtgcgcaagttcacgcgtgagcagtacttcaagtcc
agcgcgcagatggccgagctgtttgccgatgtgccgacggccctggccaacacgctggaa
atcgcccggcgctgcaacctcacgctggagctgggcaagccgatgctgcccgattacccc
acccccgcggtcaacggcgtgcgcatgccgattgacgagtacttccgccatgcctcgttt
gaagggctggaggagcggctggtacacctctaccgggatgcggcggtgcgcgacaagaag
cggcccgagtatgtggcgcggctcgaattcgagatcaacaccatcctgaagatgggcttc
cccggttacttcctgatcgtgggcgacttcatcaactgggccaagaacaacggttgcccg
gtcgggccgggccggggatcgggtgctggctcgctggtggcgtattcactcaagatcacc
gacctggacccgctgcaatacaacctgctgttcgagcgcttcctgaatccggagcgggtg
tccatgcccgacttcgatatcgatttttgccagagcaaccgcgaccgcgtgatcgattac
gtgaaagacaaatacggcaaggaagccgtgagccagatcgtgaccttcggcaccatggcg
gcgcgcgcggccatccgcgatgtgggccgcgtgctggacttcccctacggtttttgcgac
ggcatttccaagctgatccccaacaagccgggccagcacatcacgattgaacaggccaag
gagcaggagcccatcctggccgagcgcgagcgcaaggaagaagacgtgcgcacgctgctg
gagctggcgcaaaagctcgaaggcctgacccgcaacgtcggcatgcatgccggcggcgtg
ttgatcgcgcccagccggctgacggatttttgccctctctacgcccagcccggcagcgat
tcggcggtgagccagttcgacaaggacgacgtggaggccatcggcctcgtcaagttcgac
tttttgggcctggcgaccctgaccatcctggagattgcccgggagttcatcatcgcgcgc
cacccggcgcaaaaagacttcaagtttgaagacctgccgctcaacgaccgcaaggtgtat
gagctgttcggccggggccagaccgaagccgtgttccagtttgaaagtatcggcatgcag
cgcatgctcaaggatgccaagccggaccgcctcgaagacctgatcgccatgaatgcgctt
taccggccggggccgatggagctgattccgacctacatcgcgcgcaagcagggcaaggaa
gtgcccgagtacccggacccgcgcgtcaaggccatcctggaagagacctacggcatcatg
gtctaccaggagcaggtgatgcagaccgcgcagatcctgggcggctactcactgggcggc
gccgacctgctgcgccgcgcgatgggcaagaagaaaaaagaggagatggacgcgcagcgc
gaggtgttccgcaagggcgccggcgagggcggcctgagcctggagaaagccgacgaggtt
ttcgacctgatggaaaagttcgcgggctacggcttcaacaagtcacactccgccgcctat
gcgctgctggcctatcacacggcctggctcaaggtgcactacaccgccgaattcttcgcc
gccaacatgacggtggaaatggacgacaccgacaagctcaaggtcttgttcggcgacgcg
cagaagatgggcgtgcagttcgagtcgcccgacatcaaccgcggcgactaccggtttgag
ccgatcagcgcgacctcggtgcgctacggcctgggcgccatcaagggcaccggccagcag
gcgattgccgccatcgtggcggcgcgcaaagaaggcggccccttcacctcgctgtacgat
ttttgcgtgcgcgtggaccgcagccgcctgaacaaacgcacggtggaggcgctcatcaag
ggcggcgccttcgacaacctgcagctcaaccgcgcttcgctgctggcgtcggtagaccgg
gcttttgaattcgccgtcgctaccgaagccaatgccaaccagggtgggctgttcgacatg
tccgactcgcacgcggccagcacgcaggagccgccgctggtcgaggccatgcctttcggc
gtgaaggcgcgcctggtgcaggaaaaaaccgcgatcgggttttacctctcggggcatctc
tttgacgaggtggaaaccgaagtccgccagtttgccaagcgcaagatcgaagacctgatc
gactcgcgcgagccgcaactgctggccgcgattttgagcgacctgcgcatcatcaacggc
aaccgcggcaagctgattattttcaagctcgacgacaagaccgatgtgctcgaagcgtct
gtggatgaggcaaccttcaacgccaaccgcaacctgctcaaggatgacgagctggtcatc
gtgcagggaacgctgcaaggcgcgtccgagcgtttcggccgccgcttcaaggtcacgcag
gtgtgggacctggaaaccgcgcgctgcaagttcggcaagtatctgcgtgtggcggtcaac
ggcagcgcgcccgacatctccaggctggtgcgcgacttcccgccgcgccgcgaaatgtcg
gatcagggcgagctcgtgcgcggcctgccggtgcgcctgagcctcaggcggcaaaacggc
gtagccggcgccacggcagagctgcagctgggcgaagccgccaaattcttcccgaccgat
gcggcgctggccagctggatggcgcaggccgaccgcgggctggtgcagattgtttatgag
tga
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