Porphyrobacter sp. YT40: E2E27_00170
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Entry
E2E27_00170 CDS
T06153
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pot
Porphyrobacter sp. YT40
Pathway
pot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E2E27_00170 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pot03019
]
E2E27_00170 (recQ)
03400 DNA repair and recombination proteins [BR:
pot03400
]
E2E27_00170 (recQ)
Enzymes [BR:
pot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E2E27_00170 (recQ)
Messenger RNA biogenesis [BR:
pot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E2E27_00170 (recQ)
DNA repair and recombination proteins [BR:
pot03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
E2E27_00170 (recQ)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
DNA_pol_A_exoN
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QDH32897
LinkDB
All DBs
Position
complement(35620..37413)
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AA seq
597 aa
AA seq
DB search
MSVSLPPECHDILHRTFGYPAFRGQQEAVIGRVMAGEHTLALMPTGAGKSLCYQIPALAR
AGTAVVVSPLIALMHDQIRSATAAGIRAASMTSADGDNAATAEAFRNGDLDLLYVAPERA
STPGFQNLLERARIALFAIDEAHCVSEWGHDFRPDYRMLRPVLDRFPDVPRLALTATADQ
ATRADILKQLGIAEEGLIVAGFDRPNIRYAITPRDNGTRQITELLQRLEGAGIVYAPSRK
QAEDLAAAITRSGREAGFYHAGLEPERRARVQAEFVASESMVMVATIAFGMGIDKPDVRF
VVHAGLPKSIEAYYQETGRAGRDGDPAEAHLFWGVSDFARAQQWLAEVEPARLAGEKAKL
DSLSALVETPECRRAVLLRHFGEHPPETCGNCDNCLDPPQVVDASELAQKLLSAVYRTGQ
SYGIGHVEKVLTGQSDERITSRGHDRLSVFGIVDAQSARLLRPLTRTLVARGMLAATEHG
GLMLGPEARSVLKGQRSITLAEPPARQRRARRGRGGNDAPNPVGNPLFEALRARRKALAA
EHGLPAYVIFHDSVLRDMAHQCPETLGELGRIPGVGAKKLETWGPEFVAVVRDHLKA
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgagcctgcctcccgaatgtcacgacatcctgcatcgcaccttcggctacccc
gcctttcgcgggcagcaggaggcggtgatcggccgggtgatggcgggcgaacacacgttg
gcgctgatgccgaccggggcgggcaagagcctgtgctaccagatccccgcactcgcccgc
gcgggcacggcggtggtggtctccccgctgatcgcgctgatgcacgaccagatccgctcg
gccaccgcagcgggcatccgcgccgcctcgatgacctcggccgacggcgataatgccgcc
accgccgaagcctttcgcaatggcgacctcgacctgctctatgtcgcccccgaacgcgct
tcgaccccgggtttccagaacctgctggagcgcgcgcgaatcgccctgttcgccatcgac
gaggcgcattgcgtgtccgaatgggggcatgatttccgccccgattaccggatgctgcgc
ccggtgctggatcgcttccccgatgtcccccggctggcgctgaccgccaccgccgatcag
gcgacccgcgcggacatcctcaaacagctcgggatcgcggaggagggcctgattgtcgcc
gggttcgaccggcccaacatccgctacgccatcaccccgcgcgacaacggcacccgccag
atcaccgagctgctccagcggcttgagggagcaggcatcgtctatgcgcccagccgcaag
caggccgaagacctcgccgccgcaatcacccgttccgggcgcgaggcggggttttaccac
gccggactggagccggaacgccgcgcgcgggtgcaggcggaattcgttgcctcggaaagc
atggtgatggtcgccaccatcgccttcggcatggggatcgacaagcccgacgtgcgcttc
gtcgtccacgccgggctgcccaagtcgatcgaggcctattatcaggaaaccggccgcgcg
ggccgcgatggcgacccggcggaagcgcatctgttctggggcgtctccgatttcgcccgc
gcgcagcaatggctcgccgaggtcgaacccgcgcggctggcgggggagaaggccaagctc
gacagcctctccgccctggtcgaaacccccgaatgccgccgcgcggtgctgctgcgccac
ttcggcgagcatccgcccgagacttgcggcaattgcgacaattgcctcgatcccccgcag
gtggtcgatgccagcgaactggcgcagaagctgctctcggcggtctatcgcaccgggcag
agttacggcatcggccatgtcgaaaaggtgctgaccgggcaaagcgacgagcggatcacg
tcgcgagggcatgaccgcctgtcggtgttcgggatcgtcgatgcgcaatccgcacggctg
ctgcgcccgctcacgcgcacgctggtggcgcgcgggatgctggcggcgaccgagcatggc
gggctgatgctggggcccgaggcgcgcagcgtgctgaagggccagcgtagcatcaccctt
gcagaaccgcccgcgcgccagcgccgcgcgcggcgggggcggggcgggaacgacgccccc
aacccggtcggcaacccgctgttcgaagccctgcgcgcgaggcgcaaggcgctcgccgcc
gaacatggcctgcccgcctatgtcatcttccacgattcggtgctgcgcgacatggcgcac
cagtgccccgagacgctcggcgaactgggccgcatccccggcgtcggcgcgaagaagctg
gagacatgggggccggaattcgtcgccgtggtgcgggatcatctgaaggcttag
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