Porphyrobacter sp. YT40: E2E27_03730
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Entry
E2E27_03730 CDS
T06153
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
pot
Porphyrobacter sp. YT40
Pathway
pot04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
E2E27_03730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pot03019
]
E2E27_03730
03009 Ribosome biogenesis [BR:
pot03009
]
E2E27_03730
04131 Membrane trafficking [BR:
pot04131
]
E2E27_03730
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pot04147
]
E2E27_03730
Messenger RNA biogenesis [BR:
pot03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
E2E27_03730
Ribosome biogenesis [BR:
pot03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
E2E27_03730
Membrane trafficking [BR:
pot04131
]
SNARE
SNARE associated proteins
Others
E2E27_03730
Autophagy
Aggrephagy
Other aggrephagy associated proteins
E2E27_03730
Exosome [BR:
pot04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
E2E27_03730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_5
CDC48_2
AAA_22
AAA_33
AAA_2
TIP49
AAA_14
IstB_IS21
AAA_7
RNA_helicase
nSTAND3
AAA_28
NACHT
NPHP3_N
Mg_chelatase
AAA_18
AAA_17
AAA_3
ABC_tran
Sigma54_activat
Parvo_NS1
AAA_30
AAA_24
DUF815
TsaE
AAA_11
AAA_19
Zeta_toxin
NB-ARC
ResIII
PhoH
SLFN-g3_helicase
ATPase
ATP-synt_ab
MazE_antitoxin
Motif
Other DBs
NCBI-ProteinID:
QDH33528
LinkDB
All DBs
Position
complement(776827..779133)
Genome browser
AA seq
768 aa
AA seq
DB search
MADAETDTPIRTVRLQVAPARQEESGAGIARIPRSAFQKLGITEGDVVEIRGKRVTAAIA
MAAYPEDDALDVVRLDGLQRGNAQGGSGEHVEIARGESRPATRVVFAPAQREMRLQGPTQ
ALKRNFFQRPLVAGDLVATTGQQPVQNMPADVRQLLRAPAYALTQIRLTVASTSPKGIVH
IDENTEVELRAEFEEPRDGRAVVNYDDVGGMEETIRQLREMVELPLRYPELFIRLGVEPP
KGVLLHGPPGTGKTRLAQAVANESDAEFFTINGPEIMGSGYGESEKRLREVFEEASRAAP
AIIFIDEIDSIAPKRTQVPGEAEKRLVAQLLTLMDGLEKRANLVVIAATNRPDAIDEALR
RPGRFDREIVIGVPDQRGRREILSIHTRGMPLEQAVDLDELARVTHGFVGADIAALAREA
AIEAVRRIMPRLDLDERTVPPEVLEDLCVTREDFLSALKRVQPSAMREVMVQVPNVAWDD
IGGAGEAIDKLKEGIELPLKNPDAFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAKEAEAN
FISMKSSDLLSKWYGESEQQIAKLFARARAVAPCVVFIDEIDSLVPARGSGQGEPQVTGR
VVNTILAEMDGLEELQSVVVVGATNRPTLVDPALLRPGRFDELVYVGTPDKPGREHILGI
HTAKMPLADDVDLGAIAAETERFTGADLEDVVRRAGLAALRRVGGEVNAVERRDFDAALK
DSRATVTVEMEDEYKKMRGELKKRAAAVQPIGFISPDMLTPTREKKHD
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgccgaaaccgacaccccgatccgcaccgtgcgcctgcaggtcgcacctgcc
cggcaggaagaatcgggggccgggatcgcccgcatcccgcgttcggccttccagaagctc
ggcattaccgagggcgatgttgtcgaaatccgcggcaagcgggtgaccgcagcgatcgcc
atggccgcctatcccgaagacgacgcgctcgacgtggtgcggttggacggcctccagcgc
ggcaatgcgcagggcggctcgggcgagcatgtcgagatcgcgcgcggcgaatcgcgcccg
gcgacgcgcgtggtcttcgcccccgcccagcgcgagatgcggcttcagggaccgacgcag
gcgctcaagcgcaatttcttccagcgcccgctggtcgccggggatctcgtcgccaccacc
ggccagcagccggtgcagaacatgcccgccgacgtgcgccagctgctgcgcgcgcccgcc
tatgcgctgacgcaaattcgcctcaccgtcgcctcgaccagccccaagggcatcgtccac
atcgacgagaacaccgaggtcgaactgcgcgccgagttcgaagaaccacgcgatggccgt
gccgtggtgaactatgacgatgtcggcgggatggaggagaccatccgccagctgcgcgaa
atggttgaactgccgctgcgctatcccgaactgttcatccgcctcggcgtggaaccaccc
aagggcgtgctgctccatggcccgccggggacgggcaagacccgcctcgcgcaggctgtt
gccaacgaaagcgatgcggaattcttcaccatcaacggcccggaaatcatgggctcgggc
tatggcgaatccgaaaagcgcctgcgcgaagtgttcgaggaagccagccgcgccgcgccc
gcgatcatcttcatcgacgagatcgattcgatcgcgcccaagcgcacgcaggtgccgggc
gaggccgaaaagcggcttgtcgcccagctgctcacgctgatggacgggctggaaaagcgc
gccaatctggtcgtcatcgccgccaccaaccgccccgacgcgatcgacgaggcgctgcgc
cgcccgggccgcttcgaccgcgagatcgtgatcggcgtgcccgaccagcgcgggcggcgc
gagatcctcagcatccacacccgcgggatgccgctcgagcaggcggtcgatctcgacgaa
ctcgcgcgcgtcacccacggcttcgtcggtgcagatattgccgcgctcgcgcgcgaggcc
gcgatcgaggccgtgcgccgcatcatgccgcgcctcgacctcgacgaacgcaccgtgccg
ccggaggtgctcgaagacctgtgcgtcacgcgcgaggatttcctcagcgcgctcaagcgc
gtccagccctcggcgatgcgcgaggtgatggtgcaggtgcccaatgtcgcgtgggacgac
atcggcggcgcgggcgaggcgatcgacaagctgaaggaagggatcgaacttcccctcaag
aaccccgatgccttccgccgtctgggcatccgtccggccaagggcttcctgctctatggc
ccgccgggaacgggcaagaccttgctcgccaaggccgtcgccaaggaggccgaggctaac
ttcatctcgatgaagtcatccgacctcctttcgaagtggtatggcgagagcgagcagcag
atcgccaagctcttcgcccgcgcccgagcggtcgcaccatgcgtggtgttcatcgacgag
atcgattcgctggtgcccgcgcgcggctcgggtcagggcgaaccgcaggtgacgggccgc
gtggtcaacaccatccttgccgagatggacgggctcgaggagctgcaatcggtcgtggtg
gtcggcgcaaccaatcgtccgacgctggtcgatcccgccttgctgcgtccgggccgattc
gacgagctggtctatgtcggcacccccgacaagccgggtcgtgagcacatcctcggcatc
cacaccgccaagatgccgctcgccgatgatgtcgatctgggcgccatcgcggcggagacc
gagcgctttaccggcgccgatctggaagacgtggtgcgccgcgcgggtcttgccgcgctg
cgccgcgtgggcggcgaggtcaatgcggtcgaacgccgcgatttcgatgctgcgctcaag
gattcgcgcgcgaccgtgacggtcgaaatggaggacgagtacaagaagatgcgcggcgag
ctgaagaagcgcgccgccgcggtccagccgatcggtttcatttcgcccgacatgctcacc
ccgacgcgcgagaagaagcacgactga
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