KEGG   Porphyrobacter sp. YT40: E2E27_04105
Entry
E2E27_04105       CDS       T06153                                 
Name
(GenBank) ligase-associated DNA damage response DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
pot  Porphyrobacter sp. YT40
Brite
KEGG Orthology (KO) [BR:pot00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pot03400]
    E2E27_04105
Enzymes [BR:pot01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     E2E27_04105
    5.6.2.6  RNA 3'-5' helicase
     E2E27_04105
DNA repair and recombination proteins [BR:pot03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    E2E27_04105
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr DEAD Helicase_C ResIII Cas3-like_C_2
Other DBs
NCBI-ProteinID: QDH36056
LinkDB
Position
complement(855378..857816)
AA seq 812 aa
MPPAIAAWFAGRGWRVRRHQTAMLAKAQQGRHALLVADTGAGKTLAGFLPTLCDFAGDAL
PPDGLHTLYVSPLKALAQDVKRNLLTPIEEIGLPIRVETRSGDTPSDRKKRQRAKPPHVL
LTTPESLSLLLSYPESADLFAGLKRIVIDEVHAFATDKRGDLLALSLARLHALAPAAQRV
ALSATLANPRDFQEWLAPQTGDAGEIAAADLVIGEAGAEPEVEILLPNEERVPWGGHAGR
WAVPQLMQAIKANRTTLVFTNTRFLAEFIFQCLWEENDDNLPIGIHHGSLSVEARRKVEE
AMARGDLRALVCTASLDLGVDWGDIDLVVQMGAPKGSSRLLQRIGRAGHRLDVPSRAVLV
PGNRFEFLEAMAAKDAVDAGQRDGEAFRPGSLDVLAQHVMACASAAPFHEDALLDEVRSA
LAYSWVDEATFQRVLGFVSNGGYALKAYDRFQRIVRGKDGVWRLAHPNQAQRHRMNAGII
VDSEMLNVRFRNGRSLGKVEERFAAQLSPGDTFFFAGMSLEVEGVKDMDVTVRAAKTSAT
IPSYGGLRLPLTTHLATRVQAMLADRAGWGRFPDDVREWLEMQAWRSRLPAPGELLVESF
PHGGKHYTAYYTFEGWNANQSLGMLITRRMEDRGLLPGGFVANDYCLAVWGLKPVTDPAP
LLSPDILTGEFVEWVTESHLLRRAFREVAVISGLVERQQPGQRKTGKQVTFSTDLIYDVL
KKYEPDHVLLEAAWADARARMTDVGRLADLLERSERELVHVTLDRVSPLAVPVMTMIGRE
AVPQGAVDDELLLEAEGLIAAAMRPDAPLEGD
NT seq 2439 nt   +upstreamnt  +downstreamnt
ctgccccccgccatcgccgcctggttcgccgggcgcgggtggcgggtgcggcggcatcag
accgcaatgctcgccaaggcgcagcagggccgccatgcgctgctggtggccgataccggc
gcgggcaagacgcttgccgggtttctgccgaccttgtgcgactttgcgggcgatgcgctg
ccgccggatgggctgcacacgctctacgtctcgccgctgaaggcgctggcgcaggatgtg
aagcgcaacctgctgaccccgatcgaggaaatcggtctcccgatccgggtcgagacccgc
agcggcgacaccccgtccgaccgcaagaaacgccagcgcgccaagccgccccatgtgctg
ctgaccacgcccgaaagcctctcgctgctgctgtcctaccccgaaagcgccgatctattc
gcggggctcaaacgcatcgtgatcgacgaggtgcacgccttcgccaccgacaagcgcggc
gatctgctggcgctcagcctcgcgcggctccacgccctcgcccccgcggcgcagcgggtg
gcgctgtcggccacacttgccaacccgcgtgactttcaggaatggctcgccccgcaaacc
ggggacgcgggcgagatcgccgcggccgacctcgtgatcggtgaggcgggggccgagccc
gaggtcgagatcctgctccccaacgaggagcgcgtgccctggggcggccatgccgggcgc
tgggccgtcccgcagctgatgcaggcgatcaaggctaaccgcaccacgctggtcttcacc
aacacgcgcttcctcgccgaattcatcttccagtgcctgtgggaggagaacgacgacaac
ctgcccatcggtatccaccacggctcgctctcggtcgaggcgcggcgcaaggtcgaggag
gcgatggcgcgcggcgatctgcgcgcgctggtgtgcaccgccagcctcgatctcggggtc
gactggggcgacatcgacctcgtggtgcagatgggcgcgcccaagggttcctcgcgcctg
ctccagcggatcggacgcgcaggccaccggctcgacgtgccgagccgcgcggtgctggtg
ccgggcaaccgcttcgaattcctggaggcgatggcggcgaaggacgcggtcgatgcaggc
cagcgtgacggcgaggccttccgccccggcagcctcgacgtgctcgcccagcacgtcatg
gcctgcgcctctgccgcgcccttccacgaggacgcgttgctggacgaggtgcgcagcgcg
ctggcctatagctgggtcgacgaggcgaccttccaacgggtgctggggtttgtctcgaac
ggcggctatgcgctcaaggcctatgatcgcttccagcggatcgtgcggggcaaggacggc
gtgtggcggctcgcccatcccaatcaggcgcagcggcaccggatgaacgcaggcatcatc
gtcgatagcgagatgctcaacgtgcgcttcaggaacggccgcagcctcggcaaggtcgag
gagcggttcgcggcgcagctctcccccggcgacaccttcttcttcgccgggatgagcctc
gaggtcgagggcgtgaaggacatggacgtcaccgtccgcgcggcgaagaccagcgccacg
atcccgagttacggcgggctgcgcctgccgctcaccacccatctggcgacgcgggttcag
gcgatgctggccgaccgcgcgggctggggacgctttcccgacgatgtgcgcgaatggctg
gagatgcaggcatggcgctcgcgcctgcccgccccgggcgagctgctggtcgaaagcttc
ccgcacgggggcaagcattacaccgcctattacaccttcgagggctggaacgcgaaccag
agcctcgggatgctgatcacccggcggatggaggatcggggtctgcttccgggcggcttc
gtggcgaacgactattgcctcgcggtgtggggtctgaagcccgttaccgaccccgccccg
ctgctctcgcccgatattctcaccggcgaattcgtcgaatgggtgaccgaaagccacctg
ctgcgccgcgcctttcgcgaggtggcggtgatctcgggtctcgtcgagcgccagcagccg
gggcagcgcaagaccggcaagcaggtgaccttctcgaccgacctgatctacgacgtgctg
aagaagtacgagcccgatcacgtgctgctcgaagccgcctgggccgatgcgcgggcgcgg
atgaccgatgtggggcggctcgccgacctgcttgagcgctcggagcgggagcttgtccac
gtgacgctcgaccgggtctcgccgctcgccgtgccggtgatgacgatgatcggccgcgag
gcggtgccgcagggcgcggtcgacgacgagttgctgctcgaggccgaagggttgatcgcc
gccgcgatgcggccggacgcgccgctcgagggggattag

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