Porphyrobacter sp. YT40: E2E27_09930
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Entry
E2E27_09930 CDS
T06153
Name
(GenBank) AAA family ATPase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pot
Porphyrobacter sp. YT40
Pathway
pot03420
Nucleotide excision repair
pot03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E2E27_09930
03430 Mismatch repair
E2E27_09930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pot03400
]
E2E27_09930
Enzymes [BR:
pot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E2E27_09930
DNA repair and recombination proteins [BR:
pot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E2E27_09930
MMR (mismatch excision repair)
Other MMR factors
E2E27_09930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
PcrA_UvrD_tudor
Phage_attach
AAA_11
Tudor_1_RapA
DUF3553
Motif
Other DBs
NCBI-ProteinID:
QDH34614
LinkDB
All DBs
Position
complement(2125046..2127349)
Genome browser
AA seq
767 aa
AA seq
DB search
MSQNLPSPAAPPAIPAYAARLNPPQRAAVLATEGPVLMLAGAGTGKTAALTSRLAHLVAT
GRAYPSQILCVTFTNKAAREMRERVGHHLGPAAEGLPWLGTFHSICAKMLRRHAELVGLQ
HNFTIIDTDDQLRVLKALIAEAELDEKRWPARQLAGLIDCWKNRGLNPADLDAAENEAYA
NGQGTALYARYQERLKQLNACDFGDLMLHMLNILRGHPDILADYQRRFRYIMVDEYQDTN
AVQYLWLRLLAQGHKNICVVGDDDQSIYSWRGAEVANILRFEKDFPGAEVIRLEQNYRST
PHILGAASGLIRANSQRHDKTLWTEVNGGDKVKVTGVWDAPEEARRVGEAIERLEREGAS
LGQVAILVRAQYQTREFEDRFIQIGINYRIIGGFRFYERAEIRDALAYLRLVAQPQDDLA
FERIHNQPKRGLGAKALEAMHSHARRTGLPLAAAALQLADSDELPKRAATTIGGLMRQFL
HWREQAETLSPSDLLRLVLEESGYNAMLAADRSAESAGRAENLSELARAMEEYETLGDFL
EHVSLVMDNDRSDSEETVTIMTIHAAKGLEFDNVFCVGWEEGVFPSQRAIDEGGLASLEE
ERRLAYVAITRARRHCTILHAANRRIYGQWISSIPSRFIEDLPEEHIEQETTLTGGASLW
RANWSEQEDPFAHVAQARPDRAQARGPGWQRAIASGYDTTPARVRENTRSAASFAAPARS
DIAIGAMVTHAKFGTGCVIDQEGNKLTIVFEDAGEKRVLDSFVTVVG
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgagccagaacctgccctcccctgccgcaccgccggcgattcccgcctatgccgcgcgg
ctgaacccgccgcagcgcgccgccgtgctggccacggaaggcccggtgctgatgctcgcg
ggcgcaggcacgggcaagaccgccgcgctgacctcgcgcctcgcgcatctggtggcgaca
ggccgcgcttaccccagccagatcctgtgcgtcacgttcaccaacaaggctgcgcgcgag
atgcgcgaacgcgtcggccaccacctcggcccggcggcggaggggctgccgtggctcggc
accttccactcgatctgcgccaagatgctgcgccgccatgccgaactggtggggttgcag
cacaatttcacgatcatcgacaccgacgaccagctgcgtgttctgaaagcactgatcgcc
gaggccgagcttgacgagaagcgctggcccgcgcgccagctggcaggcctgatcgactgc
tggaagaaccgtggcctcaaccccgccgatctcgatgcggccgagaacgaggcctatgcc
aacggccagggcaccgcgctctatgcccgctatcaggagcggctgaagcagctaaacgcc
tgcgatttcggcgatctgatgctgcacatgctcaacatcctgcgcggccatcccgatatc
ctcgccgattaccagcgccgcttccgctacatcatggtggacgaatatcaggacaccaac
gccgtccagtacctgtggctgcggctgctggcacaggggcacaagaacatctgcgtggtg
ggggatgacgaccagtcgatctattcatggcgcggcgcggaagtcgctaatattctcagg
ttcgagaaggattttcccggcgccgaggtgatccggctcgaacagaactaccgctccacc
ccgcacatcctcggcgctgcatccgggctgatccgcgccaattcccagcgccacgacaag
acgctgtggaccgaggtcaatggcggcgacaaggtcaaggtgaccggcgtgtgggacgcg
cccgaggaagcgcgccgggtgggcgaggcgatcgagcggctcgagcgcgagggtgcctcg
ctcggccaggtcgcgattctggtgcgcgcgcagtatcagacgcgcgagttcgaagaccgc
ttcatccagatcggcatcaattaccgcatcatcggcggcttccgcttctacgagcgtgcc
gagatccgcgatgcgctggcctacctgcgccttgtcgcgcagccgcaggacgatctggcg
ttcgagcggatccacaaccagcccaagcgcgggctcggcgccaaggcgcttgaagcgatg
cactcccacgcgcggcgcaccggcctgccgctggcggcggccgcgctgcaactggccgac
agcgacgaattgcccaagcgcgccgcgaccaccatcggcggcttgatgcgccagttcctg
cactggcgcgaacaggccgaaacgctcagcccttccgatctcttgcggcttgtactggag
gaaagcggctacaatgcgatgctcgccgctgaccgctcggcggaaagcgcgggccgtgcg
gaaaacctttccgaactcgcgcgcgcgatggaggaatacgaaacgctcggcgatttcctc
gagcatgtcagccttgtcatggacaatgaccggtcggacagcgaggagacggtgacgatc
atgacgatccacgccgcgaaggggctggaattcgataacgttttctgcgtcggctgggag
gaaggcgtgttcccctcgcaacgcgcgatcgacgagggcgggctcgcgtcgctggaggaa
gaacgccgcctcgcctatgtcgcgatcacccgcgcgcggcggcattgcaccatcctccac
gccgccaaccggcgcatctatggccagtggatcagctccatcccctcacgcttcatcgaa
gacttgcccgaggaacacatcgagcaggaaaccacgctcaccggcggcgcatcgctgtgg
cgggccaactggagcgagcaggaagaccccttcgcgcatgtcgcacaggcccgcccggac
cgcgcccaggcacgcgggcccggttggcagcgtgcgatcgccagcggctacgacaccacc
cctgcccgcgtgcgcgaaaacacccgctccgccgccagcttcgccgctcccgcgcgcagc
gacatcgcgatcggcgcgatggtcacccacgccaagttcggcacgggctgcgtcatcgat
caggagggcaacaagctcaccatcgtcttcgaggacgcaggagagaagcgcgtgctcgac
agcttcgtgacggtggttggttag
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