Porphyrobacter sp. YT40: E2E27_10600
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Entry
E2E27_10600 CDS
T06153
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pot
Porphyrobacter sp. YT40
Pathway
pot03030
DNA replication
pot03430
Mismatch repair
pot03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E2E27_10600 (dnaE)
03430 Mismatch repair
E2E27_10600 (dnaE)
03440 Homologous recombination
E2E27_10600 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pot03032
]
E2E27_10600 (dnaE)
03400 DNA repair and recombination proteins [BR:
pot03400
]
E2E27_10600 (dnaE)
Enzymes [BR:
pot01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
E2E27_10600 (dnaE)
DNA replication proteins [BR:
pot03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
E2E27_10600 (dnaE)
DNA repair and recombination proteins [BR:
pot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
E2E27_10600 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
HHH_3
DUF655
COE1_HLH
tRNA_anti-codon
T2SSK
Motif
Other DBs
NCBI-ProteinID:
QDH34731
LinkDB
All DBs
Position
2261383..2264883
Genome browser
AA seq
1166 aa
AA seq
DB search
MAFAPFVPLRVLSSYSMLEGAIDPKDIAKLAKERGYPAIAICDRNGLYGIMAFAAACKGE
GVQPIIGSLLGVARDEARSTVDYVALFAQDDAGYDNLCHLVSRAHLDRPLERDPHVTLAD
LEGRTEGLIALTGAGEGGLTRLLAEGQHEAAERLADSLAALFPGRLYIELARNGDPVCER
AEDALIDLAYARDLPLVATNPANFAEPHMHKAHDAMLCIANSTQIDADERPRSNPQAFVK
SAAMMEEAFADLPEATANTLVIAQRCAFAPPYRKPILPSLAGDLAGEARMLAEDSRSGLE
ARLAAYPDLTEEERKVYFDRLEFEIDVIVKMGFPGYFLIVADFIKWAKDNGIPVGPGRGS
GAGSAVAWALTITDLDPIKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQRKYGG
DHVAQIITFGKLKARAVLRDCGRILQMSYGQVDRLCKMVPNHPTDPWPLPRALNGAADFR
REYDDNKEVKRLVDLAMQLEGLPRNSSTHAAGVVIGDRPLAQLVPLYRDPRSDMPVTQFD
MKYVESSGLVKFDFLGLKTLSVLRKAVDLLEKRGITIDLGALPLDDQAVYSLMQAGNTVG
VFQLESEGMRRTLKAVKPTNFGDIIALVSLYRPGPMDNIPLFGQRKAGQVPIEYPHPKLE
GILAETYGIFVYQEQVMQAAQVLAGYSLGDADLLRRAMGKKVQAEMDAQRGRFVEGCKKV
SDIEAKRANELFDLIDKFAGYGFNKSHAAAYALLAYQTGWLKAHYPEEFYAASMCFDMHQ
SEKLNVFVDDARRYPNGQGGVEVLPPCINASEAEFTVEQTDTGYAVRYALAGIRNVGEKA
MEAIVAEREANGPFASLKDLFERVPQGTMNRRQLEGLICAGAFDGLEPDRALLFANADLL
MAVADAAIRERSSGQAGLFGGDAGPAEDLRLQPCEPWSRTDRMAKERENFGFYFSAHPVA
QYREAASANGARTYQSLMEAGAPVGGRGSAVMAVLVESITKARTRKGGTFVRADFSDSSG
QFSAACFEEALVPDFERWAAAGECLLLTVELDSPSPDEPPRLTVRGARPLAAVVGTTAME
LTADIAHLEALRELQIELEAARGERPTGSGEVVVRLTLAEGGEVEMRLGRNFVLTGELAE
RLAAVDGIERVSLVPLKKRSNLRLVA
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggctttcgctcccttcgttccgctgcgcgtgctttcgtcctactcgatgctcgaaggg
gcgatcgatccgaaggacatcgccaagctggcgaaggagcgcggctatcccgcgatcgcg
atctgcgaccgcaacggcctatatggcatcatggccttcgccgccgcctgcaagggtgag
ggcgtgcagccgatcattggctcgctgctcggcgtggcgcgggacgaggcgcgcagcacc
gtcgattacgtcgcgctgtttgcgcaggacgatgcgggttacgataatctctgccacctc
gtcagccgcgcgcatctcgaccgtccgcttgagcgcgatccgcatgtcacgctcgccgat
ctcgaaggccgcaccgaggggctgatcgcgctgaccggcgcgggcgagggcgggctgacg
cggcttttggcggaaggccagcacgaggcggccgagcggctggcggacagtcttgcggcg
ctgttccccgggcggctctatatcgagctggcgcgcaacggcgatcccgtgtgcgaacgc
gccgaagatgcgctgatcgacttggcctatgcgcgcgaccttccgctggtcgcgaccaac
ccggccaacttcgcggagccgcatatgcacaaggcgcatgacgccatgctgtgcattgca
aactcgacccagatcgacgcggacgagcgcccgcgctccaacccgcaggccttcgtcaaa
tcggcggcgatgatggaggaggccttcgccgatcttcccgaggcgaccgccaacaccctc
gtcatcgcgcaacgctgcgcctttgcgccgccttatcgcaagccgatcctgcccagtctt
gcgggcgatcttgcgggcgaggcacgaatgctggcggaggattcgcgcagcggtctcgag
gcgcggctcgcggcctatcccgatctcaccgaggaggagcgcaaggtctatttcgaccgc
ctcgaattcgagatcgacgtcatcgtgaagatgggctttcccggatacttcctgatcgtt
gccgacttcatcaagtgggccaaggacaacggcattccggtggggcccgggcgcgggtcc
ggggcaggctcggcggtggcctgggcgctgaccatcaccgatctcgatccgatcaagctg
ggcctgctgttcgaacgcttcctcaaccccgaacgcgtgtcgatgcccgacttcgatatc
gacttctgcgaaacccgccggggcgaggtgatccgctacgtccagcgcaaatatggcggc
gatcacgtcgcccagatcatcaccttcggcaagctgaaggcgcgtgcggtgctgcgcgat
tgcgggcgcatccttcagatgagctacgggcaggtcgaccggctgtgcaagatggtgccc
aaccatccaaccgacccctggccgctgccgcgcgcgctcaatggcgcggctgacttccgg
cgcgaatatgatgacaacaaggaggtgaagcgcctcgtcgatctggcgatgcagctcgaa
ggcctgccgcgcaattcctcgacccacgcggcgggcgtggtaatcggcgaccgtccgctc
gcgcagctggtgccgctctaccgcgatccgcgttcggatatgccggtgacgcagttcgac
atgaaatatgtcgaatcgagcgggctggtgaagttcgacttcctcgggttgaaaaccctg
tcggtgctgaggaaggcggtcgacctgctggagaagcgcgggatcacgatcgacctcggc
gcgctgccgctcgacgatcaggcggtctacagcctgatgcaggcgggtaacaccgtcggc
gtgttccagctagaatccgaagggatgcgccgcacgctgaaggcggtaaagccgactaat
ttcggcgacatcatcgcgctggtctcgctctaccgccccggcccgatggacaacatcccg
ctgttcggtcagcgcaaggctgggcaggtgccgatcgaatacccgcaccccaagctcgaa
ggcatccttgccgagacctacggcatcttcgtctaccaagaacaggtgatgcaggccgcg
caggtgctcgccggttactcgcttggcgacgcggacctgctgcgccgtgcgatgggcaag
aaggtgcaggccgagatggatgcgcagcgcgggcgctttgtcgagggctgcaaaaaggtc
tccgatatcgaagcgaagcgtgccaacgaattgttcgacttgatcgacaagtttgccggc
tacggcttcaacaagtcgcacgccgccgcctatgcgctgctcgcctatcagaccggctgg
ctgaaggcgcattacccggaggaattctacgccgcctcgatgtgcttcgatatgcaccag
tcggagaaattgaacgtcttcgtcgacgacgcgcgccgctatcccaacgggcagggcggg
gtggaggtgctgccgccctgcatcaatgcctcggaggccgaattcaccgtcgagcagacc
gacacgggctacgcggtgcgctatgccctcgcaggtatccgcaatgtcggcgagaaggcg
atggaggcgatcgtcgcggagcgtgaggccaacgggcccttcgcaagcctgaaagatttg
ttcgagcgggtgccgcaggggacgatgaaccgccgccagctggaaggcctgatctgcgcg
ggtgctttcgatggcctcgaacccgaccgagcgctgctgtttgccaatgccgatttgctg
atggcggtcgccgatgcggcgatccgggagcggtccagcgggcaggcgggcctgttcggc
ggcgatgccggccccgccgaagacctgcgcctgcaaccctgcgagccgtggagccgcacc
gaccgcatggccaaggagcgcgagaatttcggcttctacttctccgcgcaccccgtcgcg
caatatcgcgaggccgctagtgccaacggcgcgcgcacctatcagagcctgatggaagca
ggcgcgccggtgggcgggcgcggatcggcggtcatggcggtgctggtcgagagcattacc
aaggcgcgcacccgcaagggcggcaccttcgtgcgggcggatttctccgattcctcgggg
cagttttccgccgcctgtttcgaggaagcgctggtgccagatttcgaacgctgggcggcg
gcgggcgagtgcctgctgctgaccgtcgagcttgacagtccgagccccgatgaacctccg
cgcctcacggtgcgcggcgcgcggccgctggcggcggtcgtcggcacgacggcgatggag
ctgaccgccgatatcgcccatctcgaggccctgcgcgaactccagatcgagcttgaggcg
gcgcgcggggagcgacccacgggatcgggggaagtggtcgtccgcctgacgcttgccgaa
gggggcgaagtcgaaatgcggctcggacgcaatttcgtgctgacgggcgagttggcagaa
cggctcgcggcggtcgatggcattgaacgcgtttcgctggtgccgctcaagaaacgcagc
aatctgcggctggtcgcctga
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