Porphyrobacter sp. YT40: E2E27_10725
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Entry
E2E27_10725 CDS
T06153
Name
(GenBank) pyridoxal-dependent decarboxylase, exosortase A system-associated
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
pot
Porphyrobacter sp. YT40
Pathway
pot00300
Lysine biosynthesis
pot00470
D-Amino acid metabolism
pot01100
Metabolic pathways
pot01110
Biosynthesis of secondary metabolites
pot01120
Microbial metabolism in diverse environments
pot01230
Biosynthesis of amino acids
Module
pot_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pot00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
E2E27_10725
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
E2E27_10725
Enzymes [BR:
pot01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
E2E27_10725
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Gene cluster
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Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
CarS-like
Motif
Other DBs
NCBI-ProteinID:
QDH34754
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Position
2287511..2288737
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AA seq
408 aa
AA seq
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MKPVGPIPAGYATLEGELAIGGRTASALVAEAGRTPLFVYSRALLDSRMADLRAALPQRV
GVNYAVKANPHPAVIAHMAGLVDGFDIASSGELALCVAAGIDPRRISFAGPGKRDDELEA
AIAAGVTLNCESEGEGMRALAIGQMLGTAPRIAIRVNPSFVMTGSGMKMGGGAKQFGVDA
DKVPALAKRLIGEGAEWRGLHIFTGSQTLRADAIIEAQANVLALAAELTEAIGLGCPKLN
MGGGLGIPYFPGDTPVDLPKVGAALADRVAQLPPALADTELCMEMGRYLVGEAGVYLTRI
IDRKESHGATFLVTDGGLHHQLAASGNFGTVVRRNYPSAIATRYGAEPTEEVNIVGCLCT
PLDRLADNAMMPRAEVGDLVAVFCAGAYGATASPSAFLGHGPAAEMLV
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaaacccgtcggcccgatccctgcgggatacgcaacgctggaaggcgaactcgccatc
ggcggcaggacggcgagcgccctggtcgccgaggccgggcgcacgccgctatttgtctat
tcgcgcgcgcttttggatagccgcatggccgatctgcgcgcagcgctgccgcagcgggtg
ggggtgaattacgcggtgaaggccaatccgcatccggcggtgatcgcgcacatggccggg
ctggtcgacgggttcgacatcgcctcctcgggcgaactcgcgctctgcgtcgctgccggg
atcgacccgcgccggatcagctttgccgggccgggcaagcgcgatgacgagctggaggcc
gccattgccgctggcgtgacgctcaattgcgagagcgagggcgaggggatgcgcgcgctc
gccatcgggcagatgctcggcactgcgccgcgcattgcgatccgggtcaatccctccttc
gtcatgaccggctcggggatgaagatggggggcggggccaaacagtttggggtcgatgcc
gacaaggtgcccgcgcttgccaagcggctgatcggcgagggggccgaatggcggggcctc
cacatcttcaccggcagtcagacgctccgtgccgacgcgattatcgaggcacaggccaac
gtgttggcgctggcggccgagctgaccgaggcgatcggccttggctgccccaagctcaat
atgggaggagggctgggcatcccctacttccccggcgacacaccggtcgatttgcccaag
gtcggtgcggcactcgccgatcgggtggcgcagctgccgccagcgctggccgacaccgag
ctgtgcatggagatgggccgctacctcgtcggcgaggcgggggtctatctcacccggatc
attgaccgcaaggaaagccacggcgccaccttcctcgtcaccgacggaggcctgcaccac
cagctggcggcatcgggcaatttcggaaccgtggtcaggcgcaattatccttccgcgatt
gcaacgcgttacggtgcggagccgacggaggaagtcaacatcgtcggctgtctgtgcacc
ccgctcgaccggctcgccgacaatgccatgatgccccgcgccgaggtgggcgatctggtc
gcggtcttctgcgccggggcgtacggggcgacggcctcgccatcggcatttctcggccac
ggcccggcggcggaaatgctggtctga
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