Porphyrobacter sp. YT40: E2E27_10815
Help
Entry
E2E27_10815 CDS
T06153
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pot
Porphyrobacter sp. YT40
Pathway
pot03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pot00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E2E27_10815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pot03019
]
E2E27_10815
03009 Ribosome biogenesis [BR:
pot03009
]
E2E27_10815
Enzymes [BR:
pot01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E2E27_10815
Messenger RNA biogenesis [BR:
pot03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E2E27_10815
Ribosome biogenesis [BR:
pot03009
]
Prokaryotic type
rRNA processing factors
E2E27_10815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
QDH34772
LinkDB
All DBs
Position
complement(2306648..2309407)
Genome browser
AA seq
919 aa
AA seq
DB search
MATRMLIDARHPEETRVAVLQGNRIEEFDFESAEHKQIKGNIYLAKVTRVEPSLQAAFVD
FGGNRHGFLAFSEIHPDYYQIPKADRDALLAEEAEAAEEEERLRAEEEDEGIAPGAEYDA
EDDSGEALAEDFAENGVEEVDTSDKDDVATIEDGASDEEGGEDDSGDSEETSEENGEDRG
RRGRGRRRQGKGGDKGGNDKGGRSRAKQVDEVRAKRMALRRRYKIQDVIQRRQVLLVQVV
KEERGNKGAALTTYLSLAGRYTVLMPNSSHGGGISRKISSTSDRKRLKDMVSDLKLPKTM
GLIVRTAGMSRTKPEIKRDFDYLARVWDEIREKTLASVAPALIHSDSDLIKRAIRDIYNK
EIEEVVVEGEEGYKSAKAFMKLLMPSHARRVKAYSDPVPLFQRYGAEDQLKAMYDPMVQL
KSGGYLIINPTEALVSIDINSGRSTKEHGIEATALHTNLEAAKEIARQLRLRDMAGLVVI
DFIDMEYSNNVRKVEKAMKEALKNDRARIQVGRISSFGLMEMSRQRLRTGVLEATTRECP
HCDGTGLVRTASSAGLSALRLIEDEAAKGKGTQIRLAASTEAAIYLLNEKRADLVEIEQR
YGVSVEVVPEGEDEGAKMSVSSMGPRPAQAPKFEPIIDEDEDDLPEEEDDFAEDEAEAEQ
RPSRKPRRERADNDDGSDDNGGRKKKRRRRRGGRGRNRDREEGAEGETQDGESADGDGDA
GSDEGEARTDTPTADDGATDSEGRPKKRRRRGGRGRKRRDGSYEGDTDENGESVASDDSV
KSEAAEAEQAEPEAASEAPVESAPEPAPEAPAEKPKRVRAPRKKKVAEPVAEDVPAELAP
ELAAEAADATVEAEAEPAPAEKPKRKRAPRKAKVAEADPAETAEATAPAGAPASEEAPEQ
PDGPAGEPRRGWWQRTFGQ
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgcgcatgctcatcgatgcgcgccacccagaagaaacacgggtggcggttctg
caaggcaaccggattgaggaattcgactttgaatctgccgaacacaagcagatcaagggc
aatatctatctcgccaaggtaacccgggtcgaaccttcgctgcaggcggcttttgtcgac
ttcggcggcaatcgccacggcttcctcgccttcagcgaaatccacccagattattaccag
atccccaaggcggatcgcgacgcgctgctcgctgaggaggcggaagccgccgaagaagaa
gagcgtctgcgcgccgaagaggaagacgagggcatcgcccccggcgccgaatatgacgcc
gaagacgacagcggcgaagcgctggccgaggatttcgccgaaaacggcgtcgaggaagtc
gacacttccgacaaggacgatgtcgccaccatcgaggatggcgcgtccgacgaggaaggc
ggcgaggacgacagcggcgactcagaggaaacgtccgaagagaatggcgaagaccgcggc
cgtcgcggtcgcgggcgtcgtcgtcagggtaaaggcggcgacaagggcggcaacgacaag
ggtggccgcagccgcgccaagcaggtcgacgaggtgcgtgccaagcgcatggcgctgcgc
cgccgctacaagattcaggacgtgatccagcgccgtcaggtgctgctggtgcaggtcgtc
aaggaagagcgcggcaacaagggcgcggcgctgaccacctatctcagccttgcgggccgt
tacaccgtgctgatgcccaattcctcgcacggcggcgggatcagccgcaagatcagctcg
accagcgatcgcaagcggctgaaggacatggtttcggacctcaagctgcccaagaccatg
ggcctgatcgtgcgcaccgccggcatgagccgcaccaagcccgagatcaagcgcgacttc
gattatctcgcccgtgtgtgggacgagatccgcgagaagaccctcgcctcggtcgcgcca
gcgctgatccattcggacagcgacctcatcaagcgcgcgatccgcgacatctacaacaag
gaaatcgaggaagtcgtcgtcgagggcgaggaaggctacaagtcggccaaggccttcatg
aagctgctgatgcccagccacgcgcggcgggtgaaggcctattccgacccggtgccgctg
ttccagcgctatggcgcggaagaccagctcaaggcgatgtatgatccgatggtgcagctc
aagagcggcggctatctgatcatcaatccgaccgaggcgctggtgtcgatcgacatcaac
tcgggccgttccaccaaggaacacgggatcgaagcgaccgcgcttcacaccaacctcgaa
gcggccaaggaaatcgcccgccagctgcgcctgcgcgacatggcgggcctcgtcgtgatc
gacttcatcgacatggaatattcgaacaatgttcgaaaggtcgagaaggcgatgaaggag
gcgctgaagaacgatcgcgcccgcattcaggtgggccgcatcagttcgttcggcctgatg
gaaatgagccgccagcggctgcgcaccggcgtgctcgaagcgaccacccgcgaatgtccg
cactgcgacggcaccggccttgtgcgcaccgcctcctccgcaggcctttcggcgctgcgg
ctgatcgaggacgaggcggccaagggcaagggcacgcagatccgtctcgcggcgagcacc
gaggcggcgatctacctgctcaacgaaaagcgcgccgatctggtcgagatcgaacagcgc
tacggcgtcagcgtcgaagtcgtccccgaaggcgaggacgaaggcgcgaagatgagtgtg
tcgagcatgggcccgcgcccggcgcaggcgcccaagttcgaaccgatcatcgacgaggac
gaggacgacctgcccgaggaggaggacgacttcgccgaggacgaggccgaggccgagcag
cgtccgtcccgcaagccccggcgcgagcgtgccgacaatgacgatggcagcgacgacaat
ggcgggcgcaagaaaaagcgccgccgtcgccggggcggacggggccgcaatcgcgaccgc
gaggaaggcgccgagggcgaaacgcaggacggcgaatccgccgacggtgacggcgacgct
ggcagcgacgagggtgaggcccgcaccgacacgccgacggctgacgatggcgcgaccgac
agcgagggccgtccgaaaaagcgccgccgtcgcggcgggcgcggtcgcaagcggcgcgat
ggcagctatgaaggcgataccgacgaaaacggcgagagcgtcgccagtgacgattcggtg
aagtccgaggcagcggaagctgagcaagccgaacctgaagcagcgtccgaagcgccagtc
gaatctgcgcccgaacccgcgcccgaagccccggctgaaaagcccaagcgggtgcgtgcg
ccgcgcaagaagaaggtggcggaaccggtggccgaggatgtgcccgccgaactcgccccg
gaactcgcagcggaagctgccgacgctaccgtcgaggccgaagccgagcccgcgccggcc
gaaaagcccaagcgcaagcgcgctccgcgcaaggccaaggtggccgaggccgatccggcc
gaaaccgctgaggcgaccgcgcctgccggtgctcccgcaagcgaggaagcgcccgaacag
cccgatggcccggccggcgaaccgcgccgtggctggtggcagcgcaccttcgggcaataa
DBGET
integrated database retrieval system
