Porphyrobacter sp. YT40: E2E27_12310
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Entry
E2E27_12310 CDS
T06153
Symbol
carB
Name
(GenBank) carbamoyl-phosphate synthase large subunit
KO
K01955
carbamoyl-phosphate synthase large subunit [EC:
6.3.5.5
]
Organism
pot
Porphyrobacter sp. YT40
Pathway
pot00220
Arginine biosynthesis
pot00240
Pyrimidine metabolism
pot00250
Alanine, aspartate and glutamate metabolism
pot01100
Metabolic pathways
pot01110
Biosynthesis of secondary metabolites
pot01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
pot00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
E2E27_12310 (carB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
E2E27_12310 (carB)
00220 Arginine biosynthesis
E2E27_12310 (carB)
Enzymes [BR:
pot01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing)
E2E27_12310 (carB)
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Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
CPSase_L_D3
MGS
ATP-grasp
Dala_Dala_lig_C
ATP-grasp_3
ATPgrasp_Ter
ATP-grasp_4
ATP-grasp_5
RimK
CoA_binding_2
GSH-S_ATP
Motif
Other DBs
NCBI-ProteinID:
QDH35036
LinkDB
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Position
complement(2630177..2633503)
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AA seq
1108 aa
AA seq
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MPKRTDISSILVIGAGPIIIGQACEFDYSGTQAIKALKEEGYRVILVNSNPATIMTDPEF
ADATYIEPITPEIVAKIIAKERPDALLPTMGGQTALNCALKLDEMGVLAEYGVEMIGAKA
DAIDKAENRQRFREAMDAIGLESARSGVANTVEEAFVILERTGLPSIIRPSFTLGGTGGG
IAYNKAEFEKIVREGLDASPTTEVLIEESLLGWKEFEMEVVRDRKDNAIIVCSIENVDPM
GVHTGDSITVAPALTLTDKEYQIMRNASIACLREIGVETGGSNVQFAVNPKDGRLIVIEM
NPRVSRSSALASKATGFPIARVAAKLAVGYTLDELTNEITGATPASFEPTIDYVVTKIPR
FAFEKFKGAANDLSTAMKSVGEVMAIGRNFQESMQKALRGLETGLDGFNRVVELEGQPRD
VITAALSRRTPDRLLKVAQAFREGLSVEDIAAVTFYDPWFLRQIEAIIAAEAEVQKDGLP
RDAAGLRRLKAMGFSDKRLATLAVRSVGVAGGLGETQAKRSGLLHDALVAMAGATSASEV
RALRHKLGVLPVFKRIDSCAAEFEAITPYMYSTYEAPTFGEPECEAMPSDRRKIVILGGG
PNRIGQGIEFDYCCVHACFALAEQGFETIMVNCNPETVSTDYDTSDRLYFEPLTDEDVLE
ILRVEQQSGELVGVIVQFGGQTPLKLAQALEDAGIPILGTSPDAIDLAEDRERFAKLVSK
LKLKQPDNGIARSRDEAAAVAARIGYPVLLRPSYVLGGRAMEIVDSEAQLDNYIATAVNV
SGDSPVLIDQYLRDAIECDVDALCDGTEVRVAGVMQHIEEAGVHSGDSACTLPPYSLPAE
VIAEMERQAEALAHALSVVGLMNIQFAVKDGEVYLIEVNPRASRTVPFVAKAIGQPVAKI
AARVMAGEKLADFPPFKRDLPYMAVKEAVFPFARFPGADPVLSPEMKSTGEVMGIDATFE
AAFLKSQLGAGMVPPQSGTVFVSVKNTDKATIVPAVKRLIDHGFRVIATGGTQSYLAERG
LAVEHVNKVAEGQPHIVDKIIDGEIALIFNTTEGWQSLLDSKSIRQAALAGKVPYYTTAA
GSLAAAMAISAIRPESLEVRSLQDYYGN
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaaagaaccgacatctcctcgatcctcgtcattggcgccgggcccatcatcatc
gggcaggcgtgcgagttcgattactccggcacgcaggcgatcaaggcgttgaaggaggag
ggctaccgcgtcatcctcgtcaactcgaacccggcgacgatcatgaccgatccagagttc
gccgatgcgacctatatcgagccgatcacgcccgagatcgtcgccaagatcatcgccaag
gaacgccccgatgcgctgctgccgacgatgggcgggcagaccgcattgaactgcgcgctc
aagctcgacgagatgggcgtgctcgccgaatacggcgtcgagatgatcggggccaaggcc
gacgccatcgacaaggccgagaaccgccagcggttccgcgaggccatggatgcgatcggg
ctcgaatccgcgcgctcgggcgttgccaacacggtcgaggaagccttcgtcattctcgaa
cgcaccggcctgccctcgatcatccgcccctccttcaccctcggcggcaccggcgggggc
attgcctataacaaggccgaattcgagaagatcgtgcgcgaaggcctcgacgcctcgccc
accaccgaagtcctgatcgaggaatcgctcctcgggtggaaggagttcgagatggaggtg
gtgcgcgaccgcaaggacaacgcgatcatcgtctgttcgatcgagaatgtcgatccgatg
ggggtccacaccggcgacagcatcaccgtcgccccggcgctgacgctgaccgacaaggaa
taccagatcatgcgcaacgcgagcatcgcgtgcctgcgcgagatcggggtggagaccggc
ggctccaacgtccagttcgcggtcaatcccaaggacgggcggctgatcgtgatcgagatg
aacccgcgcgtctcgcgctcctcggcgctggcgtcgaaggcgacgggcttccccatcgcc
cgcgtcgcggcgaagctggcggtcggctacacgctcgacgagctcaccaacgaaatcacc
ggcgcgacccctgcgagtttcgagccgaccatcgactacgtcgtcaccaagatcccgcgc
ttcgccttcgagaagttcaagggcgcggccaatgacctttcgaccgcaatgaagagcgtg
ggcgaggtcatggcgatcgggcgcaatttccaggaatcgatgcagaaggcgctgcgcgga
ctcgaaaccgggctcgacgggttcaatcgcgtggtcgagctggaaggccagccgcgcgac
gtgatcaccgccgctctgtcgcgccgcacacccgaccggctgctcaaggtcgcgcaagcc
ttccgcgaggggctgtcggtcgaagatatcgccgctgtcaccttctacgacccgtggttc
ctgcgccagatcgaagcgatcatcgccgcggaggccgaggtgcagaaggacggcctcccg
cgcgatgccgccggattgcgccgcctgaaggcgatgggcttctccgacaagcgcctcgcg
acgctggcggtgcgttcggtcggtgtggcgggcgggctgggcgagacccaagccaagcgt
tcgggcctgctccatgatgcgctcgtggcgatggccggggccaccagcgccagtgaagtg
cgcgccctgcgccacaagctcggcgtgctgccggtgttcaagcgcatcgacagctgcgcc
gccgagttcgaggcgatcacgccctacatgtattcgacctacgaggccccgaccttcggc
gagcccgagtgcgaggccatgcccagcgaccggcgcaagatcgtcatcctcggcggcgga
ccaaaccggatcgggcaggggatcgagttcgattattgctgcgtccacgcctgtttcgcc
ctcgcggaacagggcttcgagacgatcatggtcaactgcaacccggagacggtctcgacc
gattacgacacctccgaccgcctctatttcgagccgctgaccgatgaggatgtgctggaa
atcctgcgggtggaacagcagagcggcgagctggtgggcgtgatcgtgcaattcggcgga
cagactccgctgaagctggcgcaggcgctggaggatgcgggcatcccgatcctcggcacg
tctcccgacgcgatcgacctcgccgaagaccgcgagcggtttgccaagctggtgagcaag
ctgaagctgaagcagcccgacaacggcatcgcccgcagccgtgacgaggccgccgcggtg
gccgcgcgcatcggctatcccgtgctgctgcgcccgtcctacgtgcttggtggccgggcg
atggagatcgtcgacagcgaagcgcagctcgacaattacatcgccaccgcggtcaacgtg
tcgggcgacagcccggtgctgatcgaccaatacctgcgcgatgcgatcgaatgcgatgtc
gatgcgctgtgcgatggcaccgaggtgcgggtcgcgggcgtgatgcagcatatcgaggag
gccggggtgcactcgggcgattcggcctgcaccctgccgccctattcgctccccgcagag
gtgatcgccgagatggaacggcaggccgaggcgctggcgcacgcgctcagcgtcgtcggc
ctgatgaatatccagttcgcggtgaaggatggcgaggtttatctcatcgaggtcaacccg
cgcgccagtcgcaccgtgccattcgtcgccaaggcgatcgggcaacccgtggccaagatc
gccgcgcgggtgatggcgggtgagaagctcgccgatttcccgccgttcaagcgcgatctg
ccctacatggcggtcaaggaagcggtcttccccttcgcgcgcttccccggcgcggacccg
gtgctgagtcccgaaatgaagtcgaccggcgaagtgatggggatcgacgccaccttcgaa
gccgccttcctcaagtcgcagctgggcgcaggcatggtgcccccgcagtcggggacggtc
ttcgtcagcgtcaagaacaccgacaaggcgactatcgttccggcggtcaagcgcctgatt
gaccacggtttccgcgtgatcgccaccggcggcacgcagagctaccttgccgaacgcggg
ctcgcggtcgagcatgtcaacaaggtggccgagggccagccgcatatcgtcgacaagatc
atcgacggcgaaatcgcgctgatcttcaacaccaccgaaggctggcaatcgctgctggac
agcaaatcgatccgtcaggcggccttggcggggaaggttccctactacaccaccgccgcc
ggttcgctggccgccgcgatggcgatttcggcgattcggcccgagtcgcttgaagtccgc
agcctgcaggactattatggaaactga
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