Porphyrobacter sp. YT40: E2E27_13035
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Entry
E2E27_13035 CDS
T06153
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
pot
Porphyrobacter sp. YT40
Brite
KEGG Orthology (KO) [BR:
pot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pot03400
]
E2E27_13035 (addB)
Enzymes [BR:
pot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E2E27_13035 (addB)
DNA repair and recombination proteins [BR:
pot03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
E2E27_13035 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
QDH35162
LinkDB
All DBs
Position
complement(2786268..2789297)
Genome browser
AA seq
1009 aa
AA seq
DB search
MAEPRAPGPLVYSIAAHRGFADALVAGLVPRYREEGFGLARLTLLVPSTRAARTLSEAFI
RHAGATGEGGLLMPRMIAVGDLDLDEKLGAALDPLGAADIPPACDPLTRWLTLDRLIAEV
RAREGMTPLPGRARLNLAREMARTIDRLLVEEKAVEDLLDEAVLDSLAGLAGHWERSIRL
FGLVNVRWQMELNARGQVDAATRRNLLFDRAAKRWREAPPPHPVVAAGVTSAAPALARLL
RVIAGLPQGAVVLPDLDLAMDDAAWDELGLAGSSDTPGGPVFGAGDALTHPQYHLKLLLH
RMGVNRAEVQQWHRRGAAAAEPARARAISSLFLPPEASRAWIDLGPDRRRLAGVRLMESA
TIEEEAQAIALLVREALEEPEKRVAVIAADRGLARRVAQHLERWNISADDSAGRPLSLTP
AGRLFGLLAEIAAHGPAPANLVAAFAHPLVRGWDGGARADWLRGLRAFDRALRGPDPAPG
MASLRAAAAKADVAPWWEEAEALIAPLADWPAEIPLAEALARLADAAEAFADSAVWERDD
GRALGTMVQELRDRASDAGTLVETRDLGGVLRDSMEAIAVRPGYGGHPRVAIYGLLEARM
ARADLVICGGLNEGSWPQPPGADALLAPAILRALGVPGAEFRIGLAAHDLAGALGAPEVV
LSRARRNAEGPTLPSRFLLRVEALLGDDLDKEHRERAIPALLPLLDRERPPAPEYPRPAP
DPAPDKRDVAIRVTALDRLLGDPYQFYAQAILDLKRLDPLSADPFSDPALRGTLVHEILD
AWSKARTKQPGLALAPFAAEHFAAARVHPLFRALWQPRLIAALERFEQWIAQDAEQGEVV
LASEVSGEMRVDGVRVLGRADRIDRLADGSLRIIDYKTGRVPSKAEIEAGYALQLGLLGL
IAQAGGFAKEGVPAAPATGFEYWSFGKEDEGFGKRIKPMKEGKAKTGLEPDKFLPHHTAK
LHEAIARYIKGREPFLARANPDYKGYTDYDQLMRLEEWIVRLHDAEQGA
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaaccgcgcgcacccggcccgctggtctattccatcgccgcgcaccgcggcttt
gccgatgcgctggtcgcagggctggtgccgcgttaccgcgaggagggcttcggccttgcg
cgcctcaccctgctggtgccctcgacccgcgccgcgcgcaccttgtccgaggccttcatc
cgccatgccggagcgacgggtgagggcgggctcttgatgccgcggatgatcgcggtgggc
gatctcgatcttgacgagaagctcggcgcggcgctcgatccgctgggcgcggccgatatc
ccgcccgcctgcgatccgctgacgcgctggctgacgctcgaccgcctgatcgccgaggtg
cgagcgcgggagggcatgacaccgttgcccggacgcgcacggctcaacctcgcgcgcgag
atggcgcgcacgatcgaccggctgctggtcgaggaaaaggcggtcgaggatctgctcgac
gaggcggtgcttgacagtctggcggggctggcaggacattgggagcggtcgatccggctg
ttcggtctggtcaatgtccgctggcagatggagctcaacgcgcgcgggcaggtggacgcc
gccacgcgacgcaacctgctgttcgaccgcgcggccaagcgctggcgcgaagcgccgccg
ccgcatccggtggttgccgccggcgtcaccagcgccgcgcctgcgctggcgcgcttgttg
cgggtcatcgcaggcctgccgcaaggcgcggtggtgctgcccgatctcgaccttgcgatg
gacgatgccgcgtgggacgagctgggtctggcgggctcgtccgacacacccggtggaccg
gtgttcggcgcgggcgatgcgctcacccatccgcaatatcatttgaagctgctgctgcac
cgcatgggcgtcaaccgcgccgaggtgcagcaatggcaccggcgcggggcggcggcggca
gagcctgcgcgggcgcgggcgatctcctcgctgtttctgccgcccgaggcgagccgggca
tggatcgatctcggccccgaccggcgcaggctcgcgggtgtgcgactgatggagagcgcg
acgatcgaggaggaggcgcaggccatcgccctcttagtgcgcgaggcgctggaggaaccg
gaaaagcgtgtcgccgtcatcgccgccgaccgcggccttgcacgccgggtggcgcagcat
cttgagcgctggaacatcagtgccgacgattcagccgggcgtccgttgtcgctgaccccg
gcggggcggttgttcgggctgctcgccgaaatcgccgcacatggccctgcgcccgcaaac
ctcgtcgcggccttcgcgcatccgctggtgcgcggctgggacggcggggcgcgcgccgac
tggctgcgcggcctgcgcgccttcgaccgggccttgcgcggccccgatcctgcgcccgga
atggcgagcctgcgcgccgccgccgccaaggccgatgtcgcgccgtggtgggaggaggcc
gaggcgctgattgcgccgctggccgattggcccgcggagatcccgctcgccgaagcgctc
gcccgccttgccgacgcggccgaggcctttgccgacagcgcggtgtgggaacgcgacgat
ggccgcgcgctcggcaccatggtgcaggaattgagagaccgggcgagcgacgccggaacg
ctggtcgagaccagagatctgggcggcgtgctgcgcgacagcatggaggcgatcgcggtg
cgccccggctatggcgggcacccgcgcgtggcgatctatggcttgctcgaagcgcgcatg
gcgcgggccgatctggtgatctgcggcgggctcaacgaaggcagctggccgcagccgccg
ggggccgatgcgctgctggcccctgcgattttgcgcgcgctgggcgtgccgggagccgag
ttccggatcgggctcgccgcgcacgaccttgccggagcgctgggcgcgcccgaagtggta
ctctcccgcgcgcgccgcaatgccgaggggccgaccttgccctcgcgctttctgctccgg
gtcgaggcgctgctcggcgacgatctcgacaaggagcaccgcgagcgcgcgatccccgcg
ctgctcccgctgctcgaccgcgagcgcccgcctgcgccagaatacccgcgccccgcaccc
gatcccgcgcccgacaagcgcgacgtggcgatccgggtgaccgcgctcgaccggctgctg
ggcgatccctaccagttctacgcgcaggcgatcctcgatctgaagcggctcgatccgctc
agcgccgatcccttcagcgatccggcgctgcgcggcacgctggtgcacgagattctcgat
gcctggagcaaggcgcgcacgaagcagccgggcctcgccctcgcgccctttgcggccgaa
cacttcgccgccgcgcgggtccatccgctgttccgcgcgctgtggcagccgcgcctgatc
gccgcgctcgaacgcttcgagcaatggatcgcgcaggacgcggaacagggcgaggtggtg
ctggcgagcgaggtttcgggcgagatgcgcgtcgatggcgtgcgggtgctgggccgcgcc
gaccggatcgaccggctggccgatggtagcttgcggatcatcgactacaagaccgggcgg
gtgccgtccaaggccgagatcgaggccggctatgccttgcaactgggtctgctcgggctg
atcgcgcaagctggcggctttgccaaggaaggcgtgcccgccgcgcccgccacgggtttc
gaatactggtccttcggcaaggaggacgagggcttcggcaagcgcatcaaaccaatgaag
gagggcaaggccaagacggggcttgagcctgacaagttcctgccgcaccacaccgccaag
ctgcacgaggcgatcgcacgctacatcaaggggcgcgagccattcctcgcgcgggccaat
cccgactacaagggctacaccgattacgaccagctgatgcggctggaggagtggatcgtg
cggcttcacgatgcggagcagggcgcatga
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