Porphyrobacter sp. YT40: E2E27_13415
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Entry
E2E27_13415 CDS
T06153
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pot
Porphyrobacter sp. YT40
Brite
KEGG Orthology (KO) [BR:
pot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pot03032
]
E2E27_13415
03400 DNA repair and recombination proteins [BR:
pot03400
]
E2E27_13415
Enzymes [BR:
pot01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
E2E27_13415
DNA replication proteins [BR:
pot03032
]
Prokaryotic type
DNA Topoisomerases
E2E27_13415
DNA repair and recombination proteins [BR:
pot03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
E2E27_13415
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
PB1
Integrase_1
Motif
Other DBs
NCBI-ProteinID:
QDH35230
LinkDB
All DBs
Position
complement(2861103..2862128)
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AA seq
341 aa
AA seq
DB search
MAMEKLIYVDDDLPGITRRRAGKGWAYYDPSGVLIRDAGEKRRLNAIALPPAYSDAWFCP
APNGHILATGYDDAGRKQYRYHPDFRAQRESAKYDSCVAFAKRLPLMRKRVEEDLAARGV
ARETALAAVVRLLDLSAIRIGNEQYAKSNESYGATTLRADHAEVGRRRLVLHFTAKGGKD
RELEVEDADLAAAVRRMESLEEEGEDHLFRYEDEDGDVCPVTSADVNAYLREVMGEDFSA
KHFRTFHASSLAFERLATGRGVVKIGEMLEHVADRLGNTPAIARKSYVHPAVIARVEGQE
EWRKGLKLPRQTRWLTRAERGLIAFLEECGTARDYLAADAA
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
ttggccatggaaaagctgatctatgtcgacgacgatctccccggcatcacccgccgccgt
gcgggcaagggctgggcctattacgacccctcgggcgtgctgatccgcgatgccggggaa
aagcgccgcctcaacgcgatcgcgctgccgccggcctattccgatgcgtggttctgcccc
gcacccaacggccatatcctggcgaccggctatgacgacgcggggcgcaagcagtatcgc
tatcaccccgattttcgcgcccagcgcgagagcgcgaaatacgattcctgcgtcgccttc
gccaagcgcctgccgttgatgcgcaagcgggtggaggaggatctcgccgcgcgcggtgtg
gcccgcgaaacggcgctcgccgcagtggtgcgtctgctcgatctgtctgcgatccgcatc
ggcaacgagcaatatgccaagagcaacgagagctatggcgcgaccaccttgcgcgccgat
catgccgaggtgggccggcgtcggctggtgctgcacttcacggccaagggcggcaaggat
cgcgaactcgaagtcgaggatgccgatctggccgccgccgtgcgccggatggaaagcctt
gaagaggagggcgaggaccatctgttccgctacgaggacgaagatggggacgtatgtccc
gtcacttctgccgacgtgaacgcctatctgcgcgaggtgatgggcgaggatttctccgcc
aagcatttccgcacgttccacgccagcagcctcgccttcgagcggctggccacggggcgc
ggggtggtgaagatcggcgagatgctggagcacgttgccgaccggctcggcaacacgccc
gcgattgcgcgcaagtcctacgtccatccagcggtgatcgcgcgggtcgaggggcaggag
gaatggcgcaaggggttgaagctgccccgccagacccgctggctcacccgggccgaacgc
gggctgatcgcgtttctggaggaatgcggcacggcgagagactatctcgccgccgacgcg
gcctag
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