KEGG   Plecotus auritus (brown big-eared bat): 308236183
Entry
308236183         CDS       T11911                                 
Symbol
LIG1, AC0HY7_003016
Name
(RefSeq) DNA ligase 1 isoform 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
pots  Plecotus auritus (brown big-eared bat)
Pathway
pots03030  DNA replication
pots03410  Base excision repair
pots03420  Nucleotide excision repair
pots03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pots00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    308236183 (LIG1)
   03410 Base excision repair
    308236183 (LIG1)
   03420 Nucleotide excision repair
    308236183 (LIG1)
   03430 Mismatch repair
    308236183 (LIG1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pots03032]
    308236183 (LIG1)
   03400 DNA repair and recombination proteins [BR:pots03400]
    308236183 (LIG1)
Enzymes [BR:pots01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     308236183 (LIG1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     308236183 (LIG1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     308236183 (LIG1)
DNA replication proteins [BR:pots03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    308236183 (LIG1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     308236183 (LIG1)
DNA repair and recombination proteins [BR:pots03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     308236183 (LIG1)
   NER (nucleotide excision repair)
    Other NER factors
     308236183 (LIG1)
   MMR (mismatch excision repair)
    Other MMR factors
     308236183 (LIG1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C PucR
Other DBs
NCBI-GeneID: 308236183
NCBI-ProteinID: XP_080501691
LinkDB
Position
10:12340039..12376948
AA seq 935 aa
MQRSIMSFFHPKKEGKAKKPEETSSSIRETEPPPKVALKERNRVVPESDSPVKRSGRKTA
RVLCSEGEEEEEDEAITPPKGQKPAPNSPQVSPPGPVTSPESSPSLSNSSPAATISPSGI
PKRLTARKQLSKRKIQDILEEHSMDKGQEAKRKKVEEEAETSTENLPEPEGAKEKKAEEG
DLPMMPPDPQNTCKAEPPTESGSEPMVVVKQEPQDEDQAKPPPRAPKMLSSFFTPRKPAI
KKEVKEEGPGTPKKEASKGLSHSDVSSSPLDPSSYNPAKKNYHPIQDACWTQGQKVPYLA
VARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPILYLSLNCLGPPQQGLELGVGD
GVLLKAVAQATGRQLELVRAEAAETGDVGLVAENSRSTQRLMLPPPALTASGVIAKFRDI
ARLTGSTSTARKMDIIKGLFVACRHSEARYITRALSGRLRLGLAEQSVLAALAQAVSLTP
PGQEFPPAVVDAGKGKTAEARKTWLEEQGMILKQTFCQVPDLDRIVPVLLEHGLEGLPEH
CKLSPGVPLKPMLAHPTRGVSEVLKRFDEAAFTCEYKYDGQRAQIHFLEGGEVKIFSRNQ
EDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEI
QVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDMDQIAEFL
EQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKR
AGRYGGFLLASYDEESEELQAICKLGTGFSDEELEEYHQTLQALVLPTPRSYVRADGAVA
PDHWLEPSTVWEVRCADLSLSPIYPAARGLIRRRRRPPPVPRWPGCTGGRVRFRTRRTQT
KTPTWTWSVSTRPCPPGRGGPAPLVLISRSGVQCA
NT seq 2808 nt   +upstreamnt  +downstreamnt
atgcagcgaagtatcatgtcatttttccaccccaagaaagagggcaaggcaaagaagcca
gaggagacatccagcagcatcagagagaccgagccccctccgaaggtggcgctgaaggag
cggaatagagtggtgcctgagagtgactctccagtgaagaggtcggggaggaagacggcc
cgggtcctgtgcagcgaaggggaggaggaggaggaggatgaagccatcacgccccccaaa
ggccagaagcctgcccccaactctccacaagtctcccctcccggtcctgtcacgtcccct
gagagcagcccttccctctccaactcctctccagcagcgaccatctccccgtcagggatc
ccgaagcggctcacagctcgaaagcagctttctaaacggaaaattcaggatatcctagaa
gagcacagcatggacaagggccaagaagccaagaggaagaaggtggaagaagaagcagag
acctcaacagaaaacctcccagagccagaaggggccaaagagaagaaagcagaagagggg
gacctgcccatgatgccccctgacccccaaaacacctgcaaagctgagccgccgactgaa
agtggttcagagcctatggtggtggtgaagcaggaaccccaggacgaggaccaggccaag
cctccccccagagctcccaagatgctcagcagtttcttcaccccccggaagccggcaatc
aaaaaggaagtgaaagaagaggggcctggcaccccaaaaaaggaggcgtccaagggactc
tcccactcggacgtgagctccagccccctggacccatccagctacaaccctgccaagaaa
aactaccatcccatccaggatgcatgctggacgcagggccagaaggtcccttatctggct
gtggcccggacgtttgagaagattgaggaggtttctgctcggctccgcatggtggagacg
ctgagcaacttgcttcgctccgtggtggccctgtcacctccagacctcctccccatcctc
tacctcagcctcaactgcctcgggccgccccagcagggcctggagctcggcgttggggat
ggtgtccttctcaaggcggtggcccaggccacaggtcggcagctggagttggtgcgggct
gaggcagccgagacgggcgacgtggggctggtggccgagaacagccgcagcacccaaaga
ctcatgctgcccccgcccgccctcaccgcctccggtgtcatcgccaaattccgagacatc
gcccggctcactggcagcacttccacagccaggaagatggacatcattaaaggcctcttt
gtggcctgccgccactcagaagcccgatacatcaccagagccctgagtggacggctgcgc
cttgggctggcagagcaatcggtgctggccgccctcgcccaggccgtgagcctcacgcct
ccaggccaagaattccccccggctgtggtggatgctgggaagggcaagacagcagaggcc
agaaagacgtggctggaggagcaaggcatgatcctgaagcagacgttctgccaggtgccc
gacctggaccggatcgtccccgtgttgctggagcatggcctggaagggctcccggagcac
tgcaagctgagtccaggggtccccctgaaaccaatgttggcccaccccacccggggtgtc
agcgaggtcctgaaacgctttgatgaggcagctttcacctgcgagtacaaatacgatggg
cagagggcacagatccattttctggaaggcggggaggtgaagatcttcagcaggaatcag
gaagacaataccggaaagtaccctgacatcatcagccgcatccccaagattaaactcccg
tcagtcacatctttcatcctggacacagaagccgtggcttgggaccgggagaagaagcag
atacagccattccaagtgctcaccacccgcaaacgcaaggaggtggatgcagcggagatc
caggtgcaggtgtgtttgtacgccttcgatctcatctacctcaatggagagtccctggta
cgtgagcccctttcccgacgccggcagctgctccgggagaactttgtggagacggagggc
gagtttgtctttgccacctccctggacaccaaggacatggaccagatcgcagaattcttg
gagcaatcagtgaaagattcctgcgaggggctgatggtgaaaaccctggatgtcgatgcc
acctacgagattgccaagagatcgcacaactggctcaagctgaagaaggactacctggac
ggtgtgggtgacaccctggacctcgtggtgattggcgcctacctgggccggggcaagcgg
gccggccgttacgggggcttcctgctggcctcctacgatgaggagagcgaggagctgcag
gccatctgcaagcttggaactggcttcagcgacgaggagctggaagagtatcaccagacc
ctccaggccctggtgctgcccacccctcgctcctacgtccgggcagacggcgccgtggcc
ccggaccactggctggagcccagcaccgtgtgggaggtcagatgcgcagacctctccctc
tcgcccatctaccccgctgcccgcggcctgataagacgccggaggaggccaccaccagtg
cccaggtggcctggctgtacaggaggcagagtcagattcagaaccaggaggacacagacc
aagactccgacctggacctggagtgtttctactaggccctgccctccgggacggggcggg
ccagcacctctggtgttaataagcagatctggtgtgcagtgtgcgtga

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