Plecotus auritus (brown big-eared bat): 308242344
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Entry
308242344 CDS
T11911
Symbol
COL18A1, AC0HY7_009177
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform 1
KO
K06823
collagen type XVIII alpha
Organism
pots Plecotus auritus (brown big-eared bat)
Pathway
pots04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pots00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
308242344 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pots04147
]
308242344 (COL18A1)
00535 Proteoglycans [BR:
pots00535
]
308242344 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
pots00536
]
308242344 (COL18A1)
Exosome [BR:
pots04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
308242344 (COL18A1)
Proteoglycans [BR:
pots00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
308242344 (COL18A1)
Glycosaminoglycan binding proteins [BR:
pots00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
308242344 (COL18A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
308242344
NCBI-ProteinID:
XP_080512573
LinkDB
All DBs
Position
2:complement(220089739..220174719)
Genome browser
AA seq
1727 aa
AA seq
DB search
MAPDPSSRLGLPLLLLLLFTCCLAASPADLLDWLWSTNTDQPITSPVSVAPGSPPVQPTK
DTTTQVAPQDGPTEQGTAPASPELPLESLEAGQGEASTARPPSLASPDTKGENITGVGAM
ILNVAMGIRSFIQLWGNITPAENATRMEMPTLATPTGPLTFPGPSSAPQENGTTPWLTSG
ALSSPDTKRTEAGSLPVPTQPLPSPDRPRALLREPSVPRKSPGRAVSSMRGRALPWGSQQ
SPAWPPDLDGKGLLPGILERTPLLLPLVMGSLGAHAAPSAASSDPPASLSQISLSASTWD
RGAWVPHGANSVGPGLADNFALLRSPRLTPTVQPVRHVAGRCQPLPPSLPVCGSLGIGRS
WLPNHLHHSSGEEVLAAARAWGGLLRTHCHRFLAWFFCLLLAPPCGTGPSPSPPPCRQFC
EALEDACWSHLDGGRLPVACASLPAREDGHCVFIGPAAESVVTEVGLLQLLGDPPPQQVT
QIDDPDVGPAYVFGPDANSGQVARYHFPSPFFRDFSLFFHVQPATEAAGVLFAITDAAQA
VVSVGVKLSGVSDGQQHIQLLYTEPGAARTRTAASFALPAFTGQWTRFALSVDGDTVTLF
VDCEKIQGVSLARSPRGLELEPGSGFFVAQAGEADPDKFQGMIAELRVRSDPQVSPMHCL
EDDDDDDDDGASGDFGSGLAENPELLKKEEGAPLKPSPPEAPPVTSPPLAGDSHSEDSRT
EEIEEQTTVSLLGAQTLPGSSTVITWDSSDVLEEGLAGPVVQSPHARAVPGPQGPPGPAG
PPGKDGTPGRDGEPGDPGEDGRPGDIGPQGFPGTPGDVGPKGEKGDPGVGPRGPPGPQGP
PGPPGPSFRHDKLTFIDMEGSGFSGDLESLRGPRGFPGPPGPPGVPGLPGEPGRFGVNSS
VIPGPAGLPGVPGRDGHPGVPGPPGPPGAPGKDGRPGEAGQKGSLGKVGTPGPKGSKGDT
GPMGAPGENGLTGAPGPAGPPGPPGPPGPPGPGLPPGFDDMEGSGGPFWLTARGADGLQG
APGKPGAKGDPGIAGPPGTKGEVGANGPPGFPGLPGKEGVAGAQGPKGEKGTQGEKGDPG
KDGVGQPGPPGPPGLPGPVVYVSEEQDRAVSVTHGVKGQPGYAGLPGPAGPKGDMGFRGQ
QGPPGPKGEKGEPGMVFSPDGRVLPPAQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPG
RPGMNGFKGEKGEPGDTSIGFGARGPPGLPGPPGPPGPPGLPGTPVYDSNAFVESGPAGP
PGLPGHQGPSGPKGDKGEVGPPGPPGQFPFDFLQLEAELKGEKGDRGDTGQKGERGEPGG
GGFFGSSMPGPPGPPGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGP
PGPPSFPGPYRQTISVPGPPGPPGPPGPPGTLGTSSGVRIWPTYQTMLDKVPEVPEGWLI
FVADREELYVRVRNGFRKVLLEARTPLPRGTDNEVAALPPPLVQLHEGNPHPRWELPPST
SRPWRADDILVRPPRLLDPQPYPGVPHHSSYVHSRPAHPTGAPAHTHQDFQPVLHLVALN
GPQPGGLRGIRGADLQCFQQARAAGLAGTFRAFLSSRLQDLYSIVRRADRATVPIVNLRD
EELFPNWEALFSGSQGQLKPGARIFSFDGRDVLQHPAWPQKSVWHGSDPSGRRLTESYCE
TWRTEAATATGQASSLLTGRLLEQKAVSCHNTFIVLCIENSFMTSSK
NT seq
5184 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaccccagcagccgcctgggcctgcccctgctgctgctgctgctgttcacc
tgctgcctcgccgccagcccggcggatctgctggactggctgtggtccactaacacggat
cagcccatcacctcccccgtctccgtggccccaggcagcccacctgtgcagcccacaaag
gataccaccacacaggtagcccctcaggatggccccaccgagcaggggacagcgcctgcc
agccccgagctgcccctggagagtctggaggctggccagggcgaggcctccactgcccgt
cctccttccctggcaagcccggacacgaagggggagaatattactggcgtcggagccatg
atcctgaacgtggctatgggtatccggagcttcatccagctatggggtaatatcaccccc
gccgagaacgctaccagaatggagatgccaacacttgcgacccctacaggccccctcacc
ttcccagggccctccagtgccccccaggagaatgggaccactccctggctgaccagtggg
gccctgagctctccggacacgaagaggactgaggctggcagcctgccagtgcccacccag
ccactaccctccccggacaggccccgggcactactcagggagccctcggtgccacggaag
tccccaggtagagctgtctcctccatgcggggcagggcccttccctggggaagccagcag
tccccagcttggcccccggatctggatggcaaaggactcttgcccggcatcctcgagcgc
acgccgcttctgcttcccctggtgatgggctccctgggcgcgcacgctgccccctcggct
gcctcctctgacccccccgccagtctgtctcagatctcactctcagcttcaacctgggac
cgtggtgcttgggttcctcacggggctaattctgtggggcctggtcttgctgataacttt
gcactgctcaggtccccccggctgacccccacggtgcagcctgtccgccacgtcgccggc
cgctgccagcccctgccgccctccctgccggtctgcggcagcctgggcatcgggcgctcc
tggctgcccaaccacctccaccactcgagtggagaggaggtcctggcggctgcccgggcc
tggggcggcctcctccggacgcactgccaccgcttcctcgcctggttcttctgcctgctg
ctggccccaccctgcggcactggcccctcgccctccccgccaccctgccgccagttctgc
gaggccctggaggacgcgtgctggagccacttggacgggggcaggctgccagtcgcctgc
gcctcgctcccggcccgggaggacgggcactgtgtgttcattgggccggctgcagagagc
gtggtcacagaggtggggctcctccagctgctcggggatcccccgccccagcaggtcacc
cagattgatgaccccgacgtgggaccagcctacgtctttggtccagacgccaacagcggc
caggtggcccggtaccacttccccagcccgttcttccgtgacttctcgctgttcttccac
gtgcagccggccaccgaggccgcgggggtgctgttcgccatcacggatgcagcccaggca
gtggtctccgtgggcgtgaagctgtcgggcgtgagtgacggccaacagcacatccagctc
ctgtacaccgagccgggcgcggcccggacacgcacggctgccagctttgccctgcccgcc
ttcaccggccagtggacgcgctttgccctcagtgtggacggtgacaccgtgacgctcttt
gtggactgcgagaagatccagggggtgtccttggcgcggtccccgcgcggcctggagctg
gagcccggctccggcttctttgtggctcaggccggagaagcggaccctgacaagttccag
gggatgatcgcggagctgagggtgcgcagtgacccccaggtgagccccatgcactgcctg
gaggacgatgacgacgatgatgatgacggggcgtcaggggacttcggaagtggactggcg
gagaacccggagcttctcaagaaggaagagggagcacccctaaaacccagccctcccgag
gctcccccggtcacttctccgcccttggctggagacagccactcagaagattccagaaca
gaagaaatcgaggaacaaaccactgtgtctctattgggagctcagacccttcctggctca
agtacagtcatcacctgggacagcagcgatgtcctggaagagggtctcgcaggcccagtg
gtgcagagcccccatgcacgggccgtccctgggccgcaggggccccctggacccgcgggg
ccaccagggaaggatggcacccctggaagggacggtgagccaggcgaccctggggaggac
ggaagacccggtgacataggcccgcagggcttcccgggaaccccaggagacgtgggcccc
aagggtgagaagggggatcctggggttgggccaagaggacccccaggaccccaagggcct
ccggggccaccaggaccctccttccgacacgacaagctgaccttcatcgacatggagggg
tccgggttcagcggtgacctggagagccttcggggccccagaggtttccctggcccccca
ggaccccccggcgtcccaggccttcccggagagccaggccgattcggggtgaacagctcc
gtcatcccaggacccgcaggccttcctggtgtgcctgggcgggatggacaccccggggtc
cccggccccccaggacctccaggagccccaggaaaagacgggcggccaggagaagccggc
cagaaaggcagcctcggcaaagtgggcaccccaggacctaagggaagcaagggagacacc
ggtcccatgggtgctcctggagagaacggcttgacaggagcccccggaccagcaggacca
ccaggacccccagggccccccgggcctccaggaccaggacttcccccagggtttgatgac
atggaaggctccgggggacccttctggttgacagcccgaggtgctgatgggctgcaggga
gcgcccggcaagcctggagccaagggggatcctggaatagctggcccaccagggaccaag
ggagaagtcggtgcaaacggaccccctgggtttcctggccttcccggcaaagagggcgta
gctggagcccagggaccaaaaggagaaaaaggaacccagggagagaaaggtgacccaggg
aaggacggagtggggcagccagggccccccgggccccccggactcccggggcccgtcgtc
tacgtgtcggaggagcaggacagagcagtgtccgtgacccatggagtcaagggccagccg
gggtacgcaggcctccccggaccagctgggccgaagggagacatgggcttcagaggccag
cagggccccccgggacccaagggtgagaagggtgagcctggcatggtcttcagtccggac
ggcagagtgctgccccctgcccagaaaggagccaagggggagcccggcttccgaggacct
ccgggtccgtatggacggcctgggcacaaaggagagattggcttccctgggcgaccaggt
cgtcctggaatgaatggattcaaaggagagaaaggggagccaggagacaccagcatcgga
tttggtgcacggggcccacctggcctcccagggcctccagggcctcccgggccgccaggc
cttcccgggacccctgtctacgacagcaatgcctttgtggagtctggccctgcgggacct
cccggtttgccagggcaccaggggccttctggaccaaagggggacaaaggagaagtcggc
ccgcccggaccaccagggcagttcccattcgacttcctccagctagaagctgaactgaag
ggggagaagggtgaccgaggggacaccgggcagaaaggagaaaggggtgagcccgggggt
ggcggattcttcggctctagtatgcctggaccccccggcccgccaggctaccccggcatt
ccgggtcctaaaggagagagcatcaggggccagcccggcccacctggacctcagggaccc
cctggcattggctatgaagggcgccaggggcctccgggacctcctggccctccagggccc
ccagggccgccttcctttcctggcccctacaggcagactatcagcgttcctggccctcca
ggcccacctgggcccccaggcccccctggaaccctgggcacctcctcaggggtgaggatc
tggcccacgtaccagaccatgctggacaaggtgcccgaggtgcccgagggctggctcatc
ttcgtggctgacagggaggagctgtacgtccgcgtccgaaatgggttccggaaggtcctg
ctggaggcccggacgccactcccgcgtgggacggacaacgaagtggccgccttgccgccc
cccctcgtgcagctgcatgagggaaacccgcacccccggtgggaactgcccccctccacc
tcacgaccctggcgggcagatgacatcctggtcaggcccccacgcctgctggacccccag
ccctaccctggagtgccgcatcacagctcctacgtgcactcacggccagcccaccccact
ggcgctcctgcccatacccaccaggacttccaaccggtgctgcacctggtcgcactcaac
gggccacagcctggcggcctgcgtggcatccgtggcgccgacctccagtgcttccagcag
gcgcgtgcggcggggctggcaggcaccttccgtgccttcctgtcgtcgcgcctacaggac
ctctacagcattgtgcgtcgtgccgaccgtgccaccgtgcccattgtcaacctcagggac
gaggagctgtttcccaactgggaggccttgttctcgggctcccagggccagctgaagccg
ggggcccgcatcttctcctttgacggcagagacgtgctgcagcaccccgcctggccacag
aagagtgtgtggcatggctcagaccccagcgggcgccggctgaccgagagctactgtgag
acgtggcggactgaggccgcaacagccacgggccaggcctcctcgttgctgacgggcaga
ctgttggaacagaaagccgtgagctgccacaacaccttcatcgtcctctgcattgagaac
agcttcatgacctcctccaagtag
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