Plecotus auritus (brown big-eared bat): 308245726
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Entry
308245726 CDS
T11911
Symbol
SKIC2, AC0HY7_012559
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pots Plecotus auritus (brown big-eared bat)
Pathway
pots03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pots00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
308245726 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pots03019
]
308245726 (SKIC2)
Enzymes [BR:
pots01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
308245726 (SKIC2)
Messenger RNA biogenesis [BR:
pots03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
308245726 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
308245726 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
Ski2_N
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
308245726
NCBI-ProteinID:
XP_080519552
LinkDB
All DBs
Position
4:complement(101672228..101681968)
Genome browser
AA seq
1246 aa
AA seq
DB search
MMEKERLVLPPLDPLDLPLRAVEVGCTGRWELRNVPGAPESTLPHGLPPCAPNLQQEAEQ
WFLSSPAWLPLHGLEHSARKWQRKMDPWSLLTVLGAPLPSDLQAQRQPTTGQILGFKEVL
LENTDLLATTSLSLCRPPGPIAQSLWGNPTQYPFWPGGMDEPTITELSTREEAEEEIDFE
KDLLTIPPGFEKGMDFAAKAHPAPAPGLLSLSRLLEPLDLSGGDEDEKEALGQPGGTRED
TVSASPCSATLARASSLEDLVLKEASTVVSPSETPKPLPQEQWAIPVDVTSPVGDFYRLI
PQPAFQWPFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTS
PIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDIIRDLEWV
IFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVVST
AARPVPLEHFLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQ
PTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEI
HLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILPILKEIVEMLFSRGLVKVLF
ATETFAMGVNMPARTVVFDSMRKHDGNAFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCK
GRVPEMVDLHRMMTGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSK
AHEQALAELTKKLGALEEPDLTGQLVDLPAYYSWGEELTETRSLIQRRVMESVNGLKSLS
AGRVVVVKSQEHHNALGVVLQVSSNSTSRVFTTLVLCDKPVSEDPQERRSASPGVPYPED
LVGFKLFLPEGPCEHTVAKLQPGDVAAITTKVLRVNGEKILEDFIKRQQLKFKKDPPLAA
VTAAAQELLRLAQAHPAGPPTLDPVNDLQLKDVSVVEGGLRARKLEELIRGAQCVHSPRF
PAQYLKLQERRQVQKEIERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEVGTVKLAGRV
ACAMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDTGEQLPSTLKQGVERVRT
VAKRIGEVQVACGLNQTVEEFVGELNFGLVGVVYEWARGMPFSELAGLSGTPEGLVVRCI
QRLAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaaggagagactggtgctacctcccctagaccccctggacctgcctcttcgg
gctgtggaggtgggatgcactgggcgctgggagctgcggaatgtgcctggggctccagag
agcacacttccccacggccttcctccctgtgccccaaatctgcagcaagaagcagagcag
tggttcctgtcgtctccagcctggctgcctctgcatggcctggagcactcagctcgaaaa
tggcagaggaagatggatccttggtctctcctcactgtactgggggccccactcccctcc
gacctgcaagcccaaagacaaccaaccacggggcagatattgggcttcaaggaggtcctg
ctggagaatacagacctgttggccacgacctccttatctctttgccggccaccagggccc
atcgcccagtccttgtgggggaatccaacacagtaccctttctggccaggtggaatggat
gagcccaccataacagagctgagcactcgggaggaagctgaggaggagatagactttgag
aaagatctccttactattccaccgggcttcgagaaaggcatggacttcgcagcaaaggct
cacccagctccagctcctgggttgctcagcctcagccgtctgctagagcccctggatttg
agtgggggcgacgaagacgagaaggaggcattgggacagccgggaggtaccagagaagac
actgtttcagcctctccctgcagtgctaccttggcccgagcaagcagcttagaggaccta
gtgttgaaggaagcgtccacagttgtgtccccttcagagacccccaaaccccttcctcag
gagcagtgggccattcctgtggatgtcacctcccctgttggtgacttctaccgcctcatt
ccccagccagccttccagtggccatttgagcctgatgtgttccagaaacaggccatcctg
cacttggaacggcacgactcggtcttcgtggcggctcacacgtctgcagggaagacagtt
gtggctgaatacgccattgcccttgcccagaagcacatgacacgcaccatctacacttcc
cctatcaaggctctgagtaaccagaagttccgagacttccgaaacacattcggggacgtg
gggctgctcacgggggacgtgcagctgcacccagaggcctcctgcctcatcatgacgaca
gagatccttcgctccatgctgtacagcggctcggacatcatccgggacctggagtgggtc
atctttgatgaggttcactacatcaacgatgctgagcgtggggtcgtgtgggaggaggtg
ctcatcatgctccctgaccatgtctccatcatccttctgagcgccactgtccccaatgcc
cttgaatttgctgactggattggacgactgaagcgccgccagatctacgtggtcagcact
gctgcccgccccgtgcccctggagcattttctcttcacggggaacagccccaagacccag
ggggagctcttcctgttgctggactcccgaggcgccttccacacaaaggggtactatgca
gctgtggaggccaagaaggagaggatgagcaaacacgcccagacctttggggccaagcag
cccacgcatcagggggggcctgcacaggaccgtggtgtgtacctgtccctcctggcctcc
ctccgcacccgtgcgcagctgcccgtggtggtgttcacattctcccggggccgctgtgac
gagcaggcttcgggcctcacctccctggatctcaccacgagttcagaaaagagcgagatt
cacctcttcctgcagcgctgccttgctcgcctccgcggctctgaccggcagctgccccag
gtgctgcacatgtcggagctcctgcaccgaggcctgggtgtgcaccacagcggcatcctg
cccatcctcaaggaaattgtggagatgctcttcagccgcggcctggtcaaggtcttattt
gccacagagacctttgccatgggtgtcaacatgccggcccggacggtggtgtttgactcc
atgcgaaagcacgatggcaacgccttccgggacctgctccctggggagtacgtgcagatg
gcaggccgggcgggccgcaggggcctggaccccacgggcaccgtcatcctgctctgcaag
ggccgcgtgcccgagatggtggacctgcaccgcatgatgacgggtaagccatcgcagctg
cagtctcagttccgcctcacgtacaccatgatcctcaacctgctgcgggtggacgccctt
agggtggaggacatgatgaagaggagcttctccgagtttccatcccgcaaggacagcaag
gcccacgaacaggctctggctgaattaaccaagaagctgggggccttggaggagcctgac
ctgactggccaactggtggacctgcctgcgtattacagctggggagaggaactgacagaa
acccgcagcctgatccagcgacgtgtcatggagtctgtcaacgggctgaagtctctctcg
gctggaagggtggtggttgtgaagagtcaggagcatcacaacgcactgggtgtggtcctg
caggtctcctcgaactccaccagcagagtattcaccactctggtcttgtgtgataaaccc
gtgtctgaggacccacaggagaggcgctcggcctccccaggtgtgccctacccagaggac
ctggtgggattcaaactgttcctgcctgaagggccctgtgagcacactgtggccaaactc
cagcccggagacgtggctgccatcaccaccaaagtgctccgggtgaatggggagaagatc
ttggaggacttcatcaagaggcagcagctgaaattcaagaaggaccctcccctcgctgct
gtgaccgctgctgcccaggaattgctgcgtctggctcaggcccacccggcaggaccccct
acccttgaccctgtcaatgacttgcagcttaaggatgtgtcagtggttgaggggggactc
cgggcccggaagctagaggagctgatccggggggctcagtgcgtgcacagcccccgtttc
cctgctcagtacctgaagctgcaggagcgaaggcaggtacagaaggagatagagcggctg
cgcttcctgctgtcagaccagtcgctactgctgctccctgagtaccaccagcgagtagag
gtgctccgaactctgggctatgtagacgaggtgggcacggtgaagctggcggggcgcgta
gcttgtgccatgagcagccacgagctgctcctcaccgagctcatgttcgacaacgctctg
agtgccctgcggccggaggaaatagcagccctgctctccggcctggtctgccagagcccc
ggggacactggggagcagctcccaagtaccctcaaacagggagtggaacgtgtccgcact
gtggccaagcggattggtgaggtccaggtggcctgcggcctgaaccagacagtggaagaa
tttgtaggggagctgaattttggactggttggggttgtgtacgagtgggcccggggcatg
cctttctctgagttggcagggctctcggggacacccgagggcctggtggtccgctgcatc
cagcgcctggccgagatgtgtcgttcactgcgaggggcggcccgcctggtaggcgagcct
gtgctgggtgctaagatggagacggcagctaccctgctgcggagggacatcgtctttgca
gctagtctctatactcagtga
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