Plecotus auritus (brown big-eared bat): 308247303
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Entry
308247303 CDS
T11911
Symbol
DDX39B, AC0HY7_014136
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform 1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pots Plecotus auritus (brown big-eared bat)
Pathway
pots03013
Nucleocytoplasmic transport
pots03015
mRNA surveillance pathway
pots03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pots00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
308247303 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
308247303 (DDX39B)
03015 mRNA surveillance pathway
308247303 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pots03019
]
308247303 (DDX39B)
03041 Spliceosome [BR:
pots03041
]
308247303 (DDX39B)
Enzymes [BR:
pots01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
308247303 (DDX39B)
Messenger RNA biogenesis [BR:
pots03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
308247303 (DDX39B)
Spliceosome [BR:
pots03041
]
Complex C
Other components
EJC/TREX
308247303 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
308247303 (DDX39B)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
308247303
NCBI-ProteinID:
XP_080522379
LinkDB
All DBs
Position
4:102101295..102114720
Genome browser
AA seq
466 aa
AA seq
DB search
MAWSLGPRWVVIFITCIPFESKEHLGGETLPPPPAGPVMAENDVDNELLDYEDDEVETAA
GGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILG
MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN
VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML
EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGL
QQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMP
QEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG
TKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggcctggtcgctggggcctcgttgggtcgttattttcatcacttgcatccctttcgag
agcaaagagcacctggggggagagaccctccctcctccccctgccggcccagttatggcg
gagaacgatgtggacaatgagctcttggactatgaagatgacgaggtggagaccgcagct
gggggagatggggctgaggcccctgccaagaaggatgtgaagggctcctacgtctccatc
catagctctggctttcgggacttcctgctcaagccagagttgctccgggccattgttgac
tgtggttttgagcatccatcagaagttcagcatgagtgcatccctcaggccattctggga
atggacgtcttatgccaggccaagtcgggcatgggaaagacggcagtgtttgtgctggcc
acactgcagcagctggagccagttactgggcaggtgtctgtgctggtgatgtgtcacacc
cgggagctggcttttcagattagcaaggagtatgagcgcttctctaagtacatgcccaat
gtcaaggtggcagtgttttttggaggtctgtctatcaagaaggatgaagaggtgctgaag
aagaactgcccgcatatcgtcgtggggacccctggccgcatcctagccttagctcgaaat
aagagcctcaacctcaaacacattaaacactttatcttggatgaatgtgataagatgctt
gaacaactcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccacgagaag
caggtcatgatgttcagtgccaccttgagcaaagagatccgccccgtctgccgcaagttc
atgcaagacccaatggagatcttcgtggatgatgagacgaagctgacgctgcatgggttg
cagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgaccttttg
gatgtccttgagttcaaccaggtggtgatctttgtgaagtctgtgcagcgctgcatcgcc
ctggcccagctcctagtggagcagaacttcccagccatcgccatccaccgcgggatgccc
caggaggagaggctttctcggtatcagcaatttaaagattttcaacgacgaattcttgtg
gctaccaacctgtttggccgaggcatggacatcgagagggtgaacattgcctttaattac
gacatgcctgaggactctgacacctacctgcatcgggtggccagagcaggccggtttggt
accaagggtttggccatcacgtttgtgtcagatgagaatgatgccaagatcctcaatgat
gtgcaggatcgctttgaggtcaatattagtgagctgcctgatgagatagacatctcctcc
tacattgaacagacacggtag
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