Plecotus auritus (brown big-eared bat): 308252546
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Entry
308252546 CDS
T11911
Symbol
MTREX, AC0HY7_019379
Name
(RefSeq) exosome RNA helicase MTR4 isoform 1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pots Plecotus auritus (brown big-eared bat)
Pathway
pots03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pots00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
308252546 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pots03019
]
308252546 (MTREX)
03041 Spliceosome [BR:
pots03041
]
308252546 (MTREX)
03009 Ribosome biogenesis [BR:
pots03009
]
308252546 (MTREX)
03016 Transfer RNA biogenesis [BR:
pots03016
]
308252546 (MTREX)
Enzymes [BR:
pots01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
308252546 (MTREX)
Messenger RNA biogenesis [BR:
pots03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
308252546 (MTREX)
Spliceosome [BR:
pots03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
308252546 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
308252546 (MTREX)
Ribosome biogenesis [BR:
pots03009
]
Eukaryotic type
Pre-60S particles
Helicases
308252546 (MTREX)
Transfer RNA biogenesis [BR:
pots03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
308252546 (MTREX)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
308252546
NCBI-ProteinID:
XP_080533460
LinkDB
All DBs
Position
7:177531473..177583100
Genome browser
AA seq
1040 aa
AA seq
DB search
MADAFGDELFSVFEDDSAAAPGTRKDKEKGKWKGPPASAEKAGKRSDGNLQSESASVGKA
KRHVDFEGTDEPLFGKKPRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADEDY
IPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREK
QRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEV
MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLREAGDLAKGDQK
GRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTEEEKKMVEE
VFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT
ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEK
MSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVV
EKVRNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKV
KNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSRESLKNSATEAAKPAKPDE
KGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDD
MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA
RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSA
EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSF
KPHLMDVVHTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENK
FAEGITKIKRDIVFAASLYL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgccttcggggatgagctcttcagcgtgttcgaggacgactccgccgctgcg
cctggaaccaggaaagacaaggagaaggggaaatggaaggggcctccagcgtctgcggaa
aaggccgggaaacgttcggatggtaatttacaatccgagtcagctagtgttggaaaagcc
aagagacatgtggattttgaaggcacggatgaacccctttttggaaagaagcccagggtg
gaagagtccataactgaagacttaagtttggcggacttgatgcccagagtaaaagtgcag
tcagttgaaactgttgaagggtgtacacacgaggttgcacttcctgcagatgaagattat
ataccacttaaacctcgagttggaaaagctgcaaaggaatacccgttcattcttgacgct
tttcagagagaagccatccagtgtgttgacaataatcagtctgttttagtgtccgcacat
acatcagctggaaaaactgtatgtgccgagtatgccatcgcattggccttaagggaaaaa
cagcgtgtaatatttaccagcccgattaaggctctgagtaaccagaagtaccgtgaaatg
tatgaagaatttcaagatgttggtctgatgacgggagatgttactattaatcctacagca
tcttgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttctgaagtt
atgcgagaggttgcttgggtcatatttgatgaaattcattacatgagagattcagagcgt
ggtgtggtgtgggaagaaactatcattttgcttcctgataatgtccactatgtctttctc
tcggctactattccaaatgcccgacagtttgccgaatggatttgccatttacataagcag
ccttgccatgtaatttacacagactaccggcctactccattgcagcactacatttttccg
gcggggggagacggcctgcacctggtggttgatgaaaacggtgacttccgagaagataac
ttcaacaccgccatgcaagtcctccgggaggcaggggacctggcaaagggagaccagaag
ggtcggaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatgattatg
gaaagaaattttcaacctgtaattattttcagtttcagtaagaaagattgtgaagcctat
gcactccaaatgaccaagttagatttcaacacagaggaagagaagaagatggtcgaagaa
gtgttcagtaatgcgattgactgcctgtcggatgaagataagaagctccctcaggttgaa
catgtacttcctcttttgaagcgggggattggcatccaccatggcggtttactgcctatt
ttgaaagaaactatagaaatcctcttttctgaagggttgataaaggcgttatttgcgacg
gagacttttgctatgggaattaacatgccagctagaacagttttatttacaaatgcccga
aaatttgatgggaaagactttcgatggatttcttctggtgaatacattcagatgtctggt
cgtgcgggaaggagggggatggacgacagaggaatcgtgattctgatggtggacgagaag
atgagcccgaccatcgggaagcagctgcttaagggctcagccgaccctctgaatagtgct
ttccatttaacctacaacatggttctgaacttgctgcgtgtagaagaaatcaatcctgag
tacatgctggagaagtccttctaccagttccagcattacagagccattcccggggtggtg
gagaaggtaaggaactcggaagaacaatataataaaatagtaatacccaatgaagaaagt
gtggtcatctattacaagattagacagcagcttgccaaactgggtaaagaaatcgaagaa
tatattcacaaaccaaaatattgcttaccatttctacaaccaggtcgtttggtaaaggta
aagaatgaaggagacgattttggctggggagtagtcgtgaatttctccaaaaagtcaaat
gttaagcccaactctggtgagctagacccgctgtatgtggtggaagtgcttctgcgctgc
agccgagaaagcttgaaaaactcggccacggaggctgcaaaaccggccaagcccgacgag
aagggggagatgcaggttgttccggtcctggtgcacctcctgtcggccatcagcagcgtg
aggctctacatccccaaagaccttcggcccctggacaacaggcagagtgtcctaaagtca
atacaggaagttcagaaacggtttccggatggtgttcccttattggaccctatcgatgac
atgggcattcaagaccagggcctgaagaaggtcatccagaaagtggaggcgttcgagcac
cgcatgtactcgcatccgcttcacaacgacccgaacttggaaacggtgtatacgctctgt
gaaaagaaagcacagatcgcaatagatattaaatctgcaaagcgagagctcaagaaagca
agaacagtcctgcagatggatgaactcaaatgccgcaaacgcgtgttacggcgcctggga
tttgccacctcctcggatgtcatagagatgaagggacgcgtggcctgtgagatcagcagt
gccgacgagctcctgctcaccgagatgatgttcaacgggctgttcaacgacctgtccgcg
gagcaggccaccgccctgctgagctgcttcgtgttccaagagaactccagcgagatgccc
aaactcacggagcagttggccgggccacttcgccagatgcaggaatgtgccaaacgaatt
gcaaaagtttcagcagaagccaaattggaaattgatgaggaaacttacctgagctcattc
aaacctcacttaatggatgtggtgcacacctgggccacgggggcgacatttgcccacatc
tgcaaaatgacggatgtctttgaaggcagcatcatccgctgcatgcggcgcctggaagag
ctgctgcggcagatgtgtcaggcggcgaaagccatcgggaacacggagctggagaacaag
ttcgcggaaggcatcaccaaaatcaagagagacatcgtgtttgctgccagcctgtacctg
tag
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