Plecotus auritus (brown big-eared bat): 308255211
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Entry
308255211 CDS
T11911
Symbol
DDX42, AC0HY7_022044
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform 1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
pots
Plecotus auritus (brown big-eared bat)
Pathway
pots03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pots00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
308255211 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pots03041
]
308255211 (DDX42)
Enzymes [BR:
pots01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
308255211 (DDX42)
Spliceosome [BR:
pots03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
308255211 (DDX42)
Complex B
308255211 (DDX42)
Complex C
U2 SnRNP specific factors
308255211 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
308255211
NCBI-ProteinID:
XP_080538443
LinkDB
All DBs
Position
7:complement(20048743..20082640)
Genome browser
AA seq
941 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGATSSSSGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEEKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISDFKKKDIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPSNSAQQGLNSPDSPVASATKGIPGFGNSGNLSSAPVTY
PTAGAQGVNNTASGNNSREGIGGSNGKRERYTENRGGSRHSHGESGNRHGDSPRHGDGGR
HGDGYRYPESSSRHTDSHRHGENRHVGGGGRYGESRGGNDGRGTNDGRNGESRKEGCNRE
SKMDPKVDSSKMDKMDSKTDKTADGFAVPEPPKRKKSRWDS
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccctggcactaaaaggggatttggctttggaggttttgcc
attagtgctggaaagaaggaagaaccaaaactcccacaacagtcccacagtgccttcggg
gcaaccagctcttcttctggatttgggaagtcagctccaccacaactcccttctttctat
aaaattggatctaaacgggccaattttgatgaagaaaatgcatactttgaagatgaggaa
gaagactctagcaatgttgatttaccttacattcctgctgaaaactcccctacccgccag
caattccattccaagccagcagattctgacagcgatgatgatcccttggaggcattcatg
gctgaagtggaagatcaggcagcaagagatatgaagaggcttgaagaaaaggacaaggaa
aagaaaaatgtaaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcggtacatggcagagaacccaactgctggtgtcgttcaagaggaagaggaagataat
ttggaatatgatagtgatggaaatccaattgcaccttccaaaaaaatcattgatcctctt
cctcccattgatcattcagagattgactatccaccatttgaaaaaaatttttacaatgaa
catgaagagataacaaacctcaccccacagcagctaatagatcttcggcataagctcaat
cttcgggtctctggtgctgcacctcctagaccaggaagcagttttgctcatttcgggttt
gatgaacaacttatgcaccagattcggaaatctgaatacacacagcccactccaatacag
tgccagggtgtgcctgtggcattaagtggaagagacatgattggtattgccaaaacaggc
agtggaaaaactgctgcctttatctggcccatgctgattcatataatggaccagaaggaa
ctggaaccaggtgatggaccaattgcagtgattgtgtgtcctacgagggagctttgccag
cagatccatgcagaatgtaagcggtttgggaaagcatataatcttcgatcagtggccgtg
tatggagggggaagcatgtgggagcaggccaaggcccttcaagaaggggcagagattgtt
gtgtgtactccaggccgactgattgatcatgtgaagaagaaagctaccaatcttcagaga
gtctcttatcttgtatttgatgaagcagatcgaatgtttgacatgggatttgagtaccag
gtgcggtccatagccagtcatgtccgtcctgacagacagactctcttattcagtgcaact
tttcggaaaaagattgaaaaactggccagagacattctgattgaccctattcgagtggtg
caaggagatattggagaggcaaatgaagatgtgacacagattgtggaaattctccattcc
gggcctagtaaatggaactggcttacccggcgtctggtcgagtttacctcttcagggagt
gtcctcctgtttgttactaaaaaagccaatgctgaggagctggccaataaccttaaacag
gaggatcataatcttgggctgcttcatggggacatggatcagagtgaaagaaacaaggtc
atttcagactttaagaaaaaggacatccccatcctggtggccacagatgttgcagcccgt
ggtctggacattccttcaattaagactgtcattaactatgatgtggctcgagacattgat
acccatactcataggattggccgcacaggacgagcgggtgagaagggtgtggcctatacc
ttgctaacccccaaggacagcaattttgctggtgatcttgtccggaacttggaaggagcc
aatcaacatgtttccaaggaactcctagatctggcaatgcagaatgcctggtttcggaag
tcccgcttcaaaggagggaagggcaaaaagctgaacattggtggtggaggcctgggctac
agggagcggcctgggctaggctctgagaacacggatcgaggaaataataacaatgtaatg
agcaactatgaggcctacaagccctccactggagccatgggagatcggctgacggcaatg
aaagcggctttccagtcacagtacaagagtcactttgttgccgccagcttaagcaaccag
aaagccggaagttctgctgctggggcaagtggatggacaagtgcagggagcttgaattct
gtaccatctaattcagcccagcagggtcttaacagtcctgacagccccgttgctagtgcc
accaagggcatcccaggctttggcaatagtgggaacctcagcagtgccccagtgacctac
cccactgccggagcccagggagtcaacaacacagcttcagggaataacagccgagaaggg
attgggggtagcaatgggaagagagagagatatactgagaaccggggtggcagccgccac
agccatggagagagtggcaatcggcatggtgatagcccacgtcatggagatggtggtcgc
catggagatggataccgctatccagaaagcagcagccgtcatactgatagccatcgtcat
ggggaaaacaggcatgtaggaggtggaggccgatatggagagagccgaggtggaaatgat
ggtcgaggtacaaatgatggccggaatggtgaaagcaggaaagaaggttgtaatcgtgag
agcaagatggaccccaaggtggatagcagtaagatggataagatggacagcaagacagat
aagacagctgatggttttgctgtccccgagccacccaagcgcaagaaaagtcgatgggac
agttag
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