Plecotus auritus (brown big-eared bat): 308258253
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Entry
308258253 CDS
T11911
Symbol
PCF11, AC0HY7_025086
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform 1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pots Plecotus auritus (brown big-eared bat)
Pathway
pots03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pots00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
308258253 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pots03021
]
308258253 (PCF11)
03019 Messenger RNA biogenesis [BR:
pots03019
]
308258253 (PCF11)
Transcription machinery [BR:
pots03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
308258253 (PCF11)
Messenger RNA biogenesis [BR:
pots03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
308258253 (PCF11)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
308258253
NCBI-ProteinID:
XP_080544770
LinkDB
All DBs
Position
9:complement(102279047..102304156)
Genome browser
AA seq
1684 aa
AA seq
DB search
MSEPTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETSNLGPGSAPSKLHVSQIPPMAVKTPHQIPLQPEKSRPGPSLQIQDLKATNRDPRLN
RMSQHSSHGKDQSHRKEFLMNTLNQSDIKTSKTIPSEKLNSSKQEKSKSSEKITKKELDQ
LDSKSKSKSKSPSPLKNKFSHTKDLKNQESECPRVSDLSKRDPRLKKHLQDKTDSKDDDI
KEKRKTSEKKDKDEHMKSSEHRLVGSRNKIVNGIVQKQDITEDSEKQGTKPGRSSTRKRS
RSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTAKAGKIRQSGCKQSHMEDFMPPSRE
ERNAKRSTKQDVRDPRRIKKTEEERPQETTSQHSTKSGTEPKENVENWSSSKSNKRWKSG
WEENKSLQQGDDHNKSPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLASK
RELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPSEENKGGLKKKPL
LSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASRN
SGAQFDRKEQFSERARRLSPISGSRSYAENLSPHEGRRRHDEQVSAKGVREEQRSPFNDR
FPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPTKMIF
EGPNKLSPRIDGPPAPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGT
PLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGLR
FEGPHGQPVGGLRFDNPRGQPVSGLRFEGGHGPSGAAIRFDGPHGQPAGGIRFEGPLLQQ
GVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEG
PVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGP
QRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGARFDNHPSQRLESVSFNQT
GPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLSRASGHYFDE
KNLQSSQFGNFGNLPGPITVGNIQASQQVLTGVAQPVPFGQGQQFLPVHPQNPGAFVQNP
SGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPPTEEEEDQNE
DQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRT
EKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQS
VPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCT
PSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEEQIDTPPACTEESIATPTEIKTENDT
VESV
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagccgacgccggccgaggccggtaccgcgggggcccgggaggacgcctgtcgg
gattatcagtcatccctcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggacgagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgagatattcccattgaagaaactttatgccctggatgtcagagtcaattcg
ttagatcctgcttggcctattaaacctctaccccccaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcctgaagagccttcaacacctggcacagtggtc
agttcccctagcatctccactcctccaattgttcctgatatacaaaagaatcttacccaa
gaacaactaataaggcagcagttacttgcaaaacaaaaacagttattagaacttcagcag
aaaaagctggagcttgaactagagcaagctaaagcacaactggcagtttctcttagtgtt
cagcaggagacatccaacttaggtcctggatctgcaccatccaaattacatgtttcacag
attccccctatggcagttaaaactccccatcagattcctttgcaacctgaaaaaagccgt
ccaggtccatccttacaaattcaggacttgaaagcaacaaaccgggatccccgtcttaat
aggatgagtcagcattcttctcatggaaaagatcaaagtcacagaaaagaattcctaatg
aacacattaaaccaatctgatattaagacaagtaaaactataccttctgaaaaactaaac
tcatccaaacaagaaaaaagtaaatcaagtgaaaaaataaccaagaaagaacttgaccag
ttagattctaaatctaaatctaaatctaaatcaccatcacctttgaaaaacaaattctct
cacacaaaagacttgaaaaatcaagaatctgaatgcccaagggtgtctgatttgagtaag
agagatccaagattaaaaaaacatcttcaagataagactgatagcaaagatgatgacata
aaagagaaaagaaaaacttcagaaaaaaaagataaagatgagcatatgaaatcatctgaa
catagactggttggaagtcgaaataaaatcgttaatggcatagtacaaaaacaagatata
acggaagactcagaaaaacagggaacaaaaccagggagatcaagtactagaaagcgatca
agatcgagatcacccaagtctcggtcaccgattatacattctcctaagagaagagatagg
cggtcacccaaacgaaggcaaaggagtatgtctccaacctcgacagccaaagctggaaag
attcgccaatctggatgtaagcagtcacatatggaagactttatgccaccttccagggaa
gagagaaatgctaagagaagtactaaacaggatgttcgagatccaaggcgaataaagaag
actgaagaggaacgaccacaagaaactacaagtcagcattctacaaagtcaggcaccgaa
ccaaaggagaatgtagaaaattggtcaagttctaagtctaacaaaagatggaaatctggt
tgggaagaaaataaaagcttacaacaaggtgatgaccataataaatctcctcatctaagg
catagggaaagctggtcaagcactaaaggaatcttgtcacctcgagccccaaagcaacag
catcgattaagtgtagatgccaatcttcagattcctaaagagttaactcttgcaagcaaa
agagaattacttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggatgag
ttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacataga
tgcaatgtacgcgatagtccttcagaagaaaataaaggtggattaaaaaagaaacctctc
ttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacaggtt
cagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttgact
gatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtaggaat
agtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttctcct
atatctgggagtcgttcttatgctgagaatctttcaccccatgagggccggagaagacat
gacgagcaagtctctgctaaaggtgtacgagaagagcagaggtcaccattcaatgatcgt
tttccacttaagcgacctagatatgaagattcagataaaccatttgtagatagcccagca
tcacgatttgccggcctcgatacaaatcagcgacttacagcattagctgaagacagacca
ttatttgatggacctagtaggccatcagtaacaagagatggcccaaccaagatgattttt
gaaggacctaataaattaagccctagaattgatggacctcctgcaccaggttctcttcga
tttgatgggtcacctggacaaatggggggaggtggccctttgagatttgaaggaccacaa
ggtcaactaggaggcgggtgtcctttgagatttgaaggtcctccaggaccagtagggaca
cctctgaggtttgaggggccaattggtcaagcaggcggaggtggttttcgatttgaaggt
tcccctggtctgaggtttgagggatctgcaggtggtctacgatttgaaggaccaggtggc
cagcctgtgggtgggctcaggtttgagggacatcggggtcaacctgtgggaggtctgagg
tttgagggacctcatggtcagcctgtgggtggacttagatttgataatccccgaggtcag
cctgtaagtggacttagatttgaggggggtcatggtccatcaggagcggcaattaggttt
gatggacctcatggtcagccagcaggtgggatcagatttgagggccctttgctacagcag
ggagttggaatgaggtttgagggcccccatggtcagtcagtagctggtctgaggtttgaa
ggacaacataatcaactcggtgggaaccttaggtttgagggtccacatggtcaaccaggg
gttgggatcaggtttgagggacctttagtccaacaaggaggtggaatgaggtttgagggt
cctgtaccaggaggtggactgagaattgaagggcctctgggtcaaggtggtccaagattt
gaaggttgtcatgctttaaggtttgatgggcagccaggtcagccatcactcttaccaaga
tttgatggattacatggtcaaccaggtcctagatttgaaagaactggtcaaccaggccca
cagagatttgatggaccacctggacagcaggttcaaccaagatttgatggtgttcctcaa
agatttgatggtccacaacaccagcaagcatcaaggtttgatattccccttggtcttcaa
ggcgcacgatttgacaatcatccttcacaaaggcttgaatccgtttctttcaatcagact
ggcccatataatgacccgcctggcaatgcttttaatgccccatcccaaggactgcaattc
caaagacatgaacaaatatttgattcacctcaaggaccaaattttaatggaccacatggc
cctggaaaccagagtttctcaaatcctcttagcagagcttctggacactattttgatgaa
aagaatcttcaaagttctcaatttggaaactttggcaatttacccggtccaataacagta
ggaaacattcaggcatctcaacaggttctgactggtgttgctcagccagtaccatttggc
cagggacaacaatttttaccagttcatccacaaaatcctggagcatttgttcaaaatcct
tcaggagcccttcctaaggcatatcctgataatcacctcagtcaggtggatgtaaatgaa
ttattttcaaaactgctaaaaacaggaattctgaaattgtcccagcctgattcagctaca
acacaagttaatgaagttgctgctcagcctcccactgaagaggaggaagatcaaaatgaa
gatcaagatgttccagatcttaccaattttacaattgaagaattaaaacagcgttatgat
agtgttataaatcgactgtacactggtattcagtgttactcttgtggaatgaggtttaca
acatcacagacagatgtatatgcagatcacttggactggcattatcggcaaaatagaact
gaaaaagatgttagcagaaaagtcactcatagacgttggtactacagtttaacagattgg
atagaatttgaggaaatagctgatttggaagaacgtgcaaagagccagttttttgaaaag
gtgcatgaagaagttgtgctcaaaactcaggaagctgctaaagaaaaagagttccaaagt
gtacctgcagggccagctggagcagtggagagttgtgaaatctgtcaagaacaatttgaa
caatactgggatgaagaggaggaggagtggcatttaaagaatgccattagagtcgatgga
aagatttatcatccatcatgttatgaagattatcaaaatacatcttcatttgattgtaca
ccatctcccagcaagacaccagttgaaaaccctttgaacattatgttgaacattgtcaaa
aatgaattgcaggaaccctgtgaaagtcccaaagttaaggaagaacaaattgatacccca
ccagcttgtacagaggagagcatagcaacacccactgaaattaaaacagaaaatgataca
gttgagtcagtttaa
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integrated database retrieval system
