Penicillium oxalicum: POX_f07771
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Entry
POX_f07771 CDS
T09521
Name
(RefSeq) ATP-dependent RNA helicase mtr4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pou
Penicillium oxalicum
Pathway
pou03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pou00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
POX_f07771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pou03019
]
POX_f07771
03041 Spliceosome [BR:
pou03041
]
POX_f07771
03009 Ribosome biogenesis [BR:
pou03009
]
POX_f07771
03016 Transfer RNA biogenesis [BR:
pou03016
]
POX_f07771
Enzymes [BR:
pou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
POX_f07771
Messenger RNA biogenesis [BR:
pou03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
POX_f07771
Spliceosome [BR:
pou03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
POX_f07771
Complex C
U4/U6.U5 tri-SnRNP related factors
POX_f07771
Ribosome biogenesis [BR:
pou03009
]
Eukaryotic type
Pre-60S particles
Helicases
POX_f07771
Transfer RNA biogenesis [BR:
pou03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
POX_f07771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
ATPase_2
SURF2
Motif
Other DBs
NCBI-GeneID:
74439970
NCBI-ProteinID:
XP_049966704
LinkDB
All DBs
Position
VI:1367034..1370428
Genome browser
AA seq
1081 aa
AA seq
DB search
MDELFDVFDDPPQAGAPLGGLPKRIRKDKKDKNKKRAANGDVKQNGDTTEPMEDVSMSEP
SAVENAPQAPASPPADKEQPDTKRLRLDEAPQPVVADSFETEQEQEIAASAGLQGSQDAT
SIKVSHQVRHQVAIPPDYPYVPLSQHKPPAEPAKKWSFTLDPFQQLAVSAIQREESVLVS
AHTSAGKTVVAEYAIAQSLKKNQRVIYTSPIKALSNQKYREFAAEFGDVGLMTGDVTINP
TATCLVMTTEILRSMLYRGSEIMREVGWVIFDEIHYMRDLNRGVVWEETIILLPDKVRYV
FLSATIPNAMQFAEWVVKMHNQPCHVVYTNYRPTPLQHYFHPAGADGIHLVVDENGVFRE
ENFQNAMSSIADKKGDDPANALAKRKGKGKDKSINKGGEKGPSDIFKIVRMIIMKKLNPV
IVFSFSKRECESGALQLKNMAFNDDSEKEMVQKVFDSAMEMLSPEDRMLPQIGNLLPLLR
RGVGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPAKTVVFTSVRKFDGTSQ
RWVTPSEFIQMSGRAGRRGLDDRGIVIMMVGEEMDPAVAKEIVRGEQDRLNSAFHLGYNM
ILNLMRVEGISPEFMLERCFKQFQNTGDVASLEASLREMEVKKTQMVIPDEGTIREYYDL
RTQLDTFADDVRAVFTHPDHCRPYMKPGRLIHIKHQGRDFGWGVVVKISQRKPASNSKEP
IEPHKEWVVDVLLNIAAGQSVGTKSSQDMPPGVHPAQPGEPNRHEIVPVVLSCIHNISSA
CFKIPHDMKNTDSKNSVGKTLAEVQRRFPDGVPPLDPVEDMGIKDDSFKKLLRKIEVLES
RLLGNPLHHSPRLPELYNQYVVKVNLTNEIKSVKKKISEAMSIMQLDELKCRKRVLRRFG
FINEAEVVQMKARVACEISTGDELMLAELLFNGFFNNLTPEQVAAVISVFVFEEKVKEAP
PLSKDELSKPLKEIQSQARIIAKVSQESKMAVNEDEYVQSFHWELMEVVYAWSHGKSFAE
ICKMTEVYEGSLIRVFRRLEECLRQMAQAAKVMGSEDLESKFEEALTKVRRDIVAAQSLY
L
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atggacgagcttttcgacgtgttcgatgacccgccccaggctggtgcgcctttgggtgga
cttccaaagcgcatcaggaaggataaaaaggacaagaacaaaaagcgtgcagccaacggt
gatgtcaagcaaaacggagacacgacggaacccatggaggacgtgagcatgtctgaaccg
tctgctgtcgagaatgcacctcaagcacctgcgtcgcctcctgccgacaaggaacagccc
gataccaaacgtcttcgtcttgatgaagcgccgcagcccgtcgtagccgactccttcgaa
acggaacaagagcaggaaatcgccgcctccgctggccttcaaggtagccaagatgcgact
tcgatcaaggtgtcccaccaagtgcgccatcaagtggcgattccaccagactacccatac
gtgcctctttcacaacacaagccgccagcggaaccggcgaaaaaatggtccttcacactc
gatccattccagcagcttgctgtcagcgcaattcagcgtgaggagagtgtgttggtttca
gcacataccagtgccggtaagacggttgtcgcagaatacgcgattgcgcaaagcttgaaa
aagaaccagcgagtcatttacaccagtccgatcaaggccctgagcaaccaaaaatatcgt
gaatttgcggccgaatttggtgacgtgggtctcatgacgggtgatgttaccatcaatcca
acggctacatgtctcgtcatgacaaccgaaattctgcgatcaatgttgtatcgaggatca
gagattatgcgtgaagttggatgggtcatcttcgacgagattcactacatgcgtgacttg
aatcgtggagtcgtctgggaagagaccattattctccttcctgacaaggtccgatatgtt
ttcctttcggcaacaatccccaacgccatgcaatttgccgaatgggttgttaaaatgcac
aatcagccatgtcacgtcgtctacaccaattaccgtcccactcccctccaacactacttc
catccggctggtgccgacggcatccatcttgttgttgacgagaatggcgtcttccgcgaa
gaaaatttccagaacgccatgagctctatcgctgacaaaaagggcgacgaccccgccaat
gccttggccaaacgaaagggaaaaggcaaagacaaatcaatcaataagggtggagagaag
ggaccttctgatattttcaagattgtacgaatgatcataatgaagaagctcaatccagtc
attgtcttcagcttcagcaagagagaatgcgagagcggcgctctccaattgaagaacatg
gccttcaacgatgactccgagaaggaaatggtacaaaaggtcttcgacagtgctatggaa
atgttgtcgccagaagatcgaatgttacctcagatcggcaacctcctgcccctgcttcgc
agaggcgtcggcgtccatcactccggtctgcttccaattctcaaagaaacgatcgagatc
cttttccaagaaggtctcattaaggttttgtttgctacggagacgttctcgatcggtctg
aacatgcctgcaaagactgtggtcttcacaagcgttcgcaagttcgacggcaccagtcaa
cgctgggtaaccccatcagaattcatccagatgtcagggcgcgcgggtcgtcgaggtctc
gacgatcgaggtattgtcattatgatggttggcgaagagatggacccggcggttgcgaag
gaaatcgttcgtggtgagcaagaccggttgaactcggccttccatcttggatacaacatg
attctcaatctcatgagagtggaaggcatttctcctgagttcatgcttgaaagatgcttc
aagcaattccagaacacaggagacgttgcttctttagaggcttctcttcgggaaatggaa
gtcaagaagacacagatggtcatcccggacgaaggtaccattcgggaatattacgacctt
cgcacccaactcgacaccttcgccgatgatgtccgtgctgtcttcacccatcccgaccac
tgtcgtccctacatgaagcccggccgtctcattcacatcaagcatcaaggccgcgatttt
ggatggggtgttgtggtcaaaatatcgcaacgaaagccggccagcaattccaaggaacca
attgagcctcataaggagtgggttgttgatgttctgttgaacatcgctgcgggtcagtca
gtcggcacaaagtcttcccaggacatgccccctggtgtccaccccgctcagccgggggaa
cctaatcgtcacgaaattgttcccgttgtgctttcttgcattcacaacatttcttccgcc
tgcttcaagatccctcacgacatgaagaataccgattctaaaaactccgtcggaaaaact
ctggccgaagtccaacggcgcttccccgatggtgtgcctcctctggatcctgttgaggac
atggggatcaaagatgattccttcaagaagttgttacgaaaaattgaagtgcttgagtcc
cgcctcttgggaaatcccctccaccactctcctcgactgccagaattatacaatcagtat
gtggtcaaggtcaacctgacgaatgagatcaagtcagtcaagaagaaaatcagcgaggct
atgtcgatcatgcaactcgacgagttgaagtgccgtaaacgtgtgcttcgccgctttggc
ttcatcaatgaggcggaagtcgttcaaatgaaggctcgtgttgcgtgtgagattagtact
ggcgatgagctcatgctggccgagttgcttttcaacggcttcttcaacaacctcactccc
gagcaggtggcagccgtgattagtgtgttcgtatttgaggagaaagtcaaggaagcccca
cccttgagtaaggacgagctttcaaagcccctgaaagagattcagtctcaagcccgcatc
atcgccaaggtgtctcaagagtcaaaaatggctgtgaatgaagacgagtatgtccagagc
ttccactgggagctgatggaagtggtgtacgcgtggtcacatggaaagtcttttgcggag
atttgtaaaatgacggaagtctacgaaggtagcttgatccgtgtcttccgtcgattggaa
gaatgtctgcgtcaaatggcgcaggccgccaaggtgatgggcagcgaggacttggagagc
aagttcgaagaggcgctgaccaaggtccgccgtgacattgtggccgctcagtccctctat
ctgtag
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