Paralichthys olivaceus (Japanese flounder): 109624388
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Entry
109624388 CDS
T06037
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
pov
Paralichthys olivaceus (Japanese flounder)
Brite
KEGG Orthology (KO) [BR:
pov00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pov03009
]
109624388 (ighmbp2)
03012 Translation factors [BR:
pov03012
]
109624388 (ighmbp2)
Enzymes [BR:
pov01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109624388 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
109624388 (ighmbp2)
Ribosome biogenesis [BR:
pov03009
]
Eukaryotic type
Other ribosome biogenesis factors
109624388 (ighmbp2)
Translation factors [BR:
pov03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109624388 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
nSTAND3
DEAD
UvrD-helicase
AAA_16
ResIII
AAA_22
IstB_IS21
Viral_helicase1
T2SSE
PIF1
DnaB_C
PhoH
PNISR
Zot
AAA
ATPase
ABC_tran
HEM4
Helicase_RecD
AAA_7
AAA_25
AAA_31
BBIP10
Flavi_DEAD
AAA_18
Motif
Other DBs
NCBI-GeneID:
109624388
NCBI-ProteinID:
XP_019934560
LinkDB
All DBs
Position
Unknown
AA seq
990 aa
AA seq
DB search
MAVEEFVLKTLELLEEEREAEIEETRLWQENISLKDLQNKGVCLLKLQIGSQSTGLYGRT
VVILEPRKHLGFSSLPSNSFGPGDIVGLYDAGGCTAASQIGTGIVTRVSQTSISVAFDDS
KDGLSFDTDALYSLLKLANDVTYKRMKKALNALNRYGNGPAANLINVLFGDSKPSAQSQP
NEVEFSNLNLDESQREAVSFALSQRELAVIHGPPGTGKTTTVVEIILQAVKQGQKILCCA
SSNVAVDNLVERLARCKAKVLRLGHPARLLESIQKHSLDAILAQSDNANIITDIRKDMDK
AFSAMKKKTHEKGERFNFRREIGELRKELKTREATAIAQILKSADVVLSTNTGACNDGPL
KFLPAEHFDWVVIDECAQALESSCWIALLRARKCILAGDYKQLPPTIKSQTAASKGLSLS
LMERLIQMYGDSVVRMLTVQYRMNSAIMDWASKEMYQGRLTAHSSVERHLLKDLPGVTCV
DETSTPLLLIDTSGCGLSEMEVPDEQSKGNQGEVDIVDLHVKALTEAGVKARDIAVIAPY
NLQVDLLRQKLSTRHPELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAV
TRARRHIALVCDAQTVKNHAFLKSLIDHMTEFGEVRTAFEYIQDIVPQNYTRDHKDTNAP
TTSSTSTKQRVKDQSTSKMKQEQKKSTYSSKKENTAGSEKHPKSCTSTQTKMEQNKNRAT
EIREQVESFLKNLNQSELQFPSSFNSHDRLLVHQIAEELGLVHESKGEGKDRYISVSRPL
ESASAEEPTQAEKEEETTILEEETSHNPQSERQPAFDLKSLHLERMEREQQKRQEHAQQK
KQQSSIPAAQAQISKKTKGKNRTKAGVCDIAAAAALDDDFDTLINAVVKAESVCSFIKCK
ASVLTLGQLCIFCNRQYCLSHHIPEVHGCGEKAKSHARMRISKEGVLYAGSGKKDKSMDP
NKKAYLQRKLDSKLKDMASQRKTKNKEKDT
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggcggttgaagaatttgtgttgaagacactcgagcttctagaggaggagagagaagct
gaaatagaggagaccaggttatggcaggagaacatctctctcaaggatcttcaaaataaa
ggtgtttgcctgctgaaactgcagataggaagtcagtctacaggcttgtatggacgcaca
gtcgtcatcctagagccaagaaagcatcttggtttctcatctctaccgagcaacagcttt
gggcctggtgatattgttggcttatatgacgcgggtggatgcaccgcagcctctcagatt
ggcacagggatcgtgacgagggtcagccagacctctatcagtgtggcttttgatgattca
aaggatgggctcagttttgacacagatgctctttacagccttttaaaattagcaaatgac
gtcacctacaaacgcatgaaaaaagccttgaatgcattaaacagatacggtaatggacca
gcagccaatctgatcaatgttctttttggagattcaaaaccctccgctcaatcacagcca
aatgaagttgaattctcaaatctgaatctggatgaatcccagagagaagctgtgtccttt
gctttgtctcagagagagttagctgtgatacatggacctcctggaaccgggaaaaccacc
acggtggtggaaataatcctgcaagcagtcaaacaaggccaaaagatcctgtgctgtgcc
tcatccaacgtggctgtggataatttagtggagaggttggcaaggtgtaaggccaaagtc
ctgaggttgggtcaccctgccagactgctggagtccattcagaaacattcactggatgcc
atcctcgctcagagcgataatgcaaacatcatcactgacatccgtaaagacatggataaa
gcttttagtgcaatgaagaagaagacacacgagaaaggagagcggttcaatttcagaaga
gaaataggggagctgagaaaagagctgaagaccagggaagcaacagccatcgcccagatc
ctgaaaagtgctgatgttgtcttatcaaccaacacaggtgcctgtaatgacggccctctg
aagttccttccagcagagcattttgattgggtggtgatagatgagtgtgctcaggccctg
gagagcagctgctggatagctctcctccgggctcggaagtgcatcctggctggggactac
aagcagctaccaccgactatcaaatcacaaaccgctgcatcaaaaggcttgtccctcagt
cttatggagagactcatccagatgtatggggactcggtggtgcgtatgctgacggttcag
taccgcatgaacagtgccatcatggactgggcctccaaagagatgtaccagggaagactg
actgctcacagctctgtggagagacatctcttaaaagatctaccaggagtgacctgtgtt
gacgagaccagcacgccgctccttctgatcgacacgtcaggctgtggtctgagtgaaatg
gaggtcccagatgagcagtccaaaggaaatcaaggtgaggtcgacattgttgatctgcat
gttaaggccttgactgaagctggagttaaagccagagacatagctgttattgccccttac
aatttacaggtggatcttctgcgtcagaagctgtctacaaggcatccagagctggagata
aagtctgtggatggatttcagggcagagagaaagaggctgtggttttgtcgttagttcga
tccaatagaaaaggtgaagttggatttctggcggaggacagaagaataaatgtggctgtt
acacgtgcgagacgccacattgctttagtgtgcgacgcacagactgtcaagaatcatgct
ttcttgaagtccctgattgatcacatgactgagtttggtgaggtcaggacagcttttgag
tacatccaggatatcgtgccacagaattacacccgtgaccacaaagacacaaatgcgccc
accaccagctccacatcaaccaaacaaagggtcaaagatcagtctaccagcaagatgaag
caagaacaaaagaaatcaacctacagcagcaagaaggaaaatactgctggttcagagaag
cacccaaaatcctgcacatcgacgcagacaaagatggaacagaacaagaacagagccact
gagatcagagagcaagtggagagctttctgaagaacctaaatcagagtgaactacaattc
ccatcatccttcaactctcatgaccgcttgctggtccaccagattgcggaggaactgggc
cttgtgcatgagagcaaaggtgaggggaaagaccggtacatcagtgtgtccaggcccctt
gagtcagcatcagccgaggagccgacacaagcagaaaaggaagaggaaacgacgatcctg
gaggaggagacgagccacaatccccaaagtgagcgtcagcctgcattcgatctgaaaagt
ttacatttggagcgaatggagagggagcagcagaaaagacaagaacacgctcaacagaaa
aagcaacaaagcagcatcccagcagctcaggcccaaatatccaagaagaccaaaggaaag
aaccgaacaaaggcaggcgtctgcgatattgctgctgccgcggctctagacgatgacttt
gacacactcatcaacgccgtcgtgaaggccgaaagtgtgtgtagtttcatcaagtgtaaa
gcgtctgtgctgaccctcggacagctctgtattttctgtaatagacagtactgtctcagt
catcatataccagaggttcacggatgcggagaaaaagccaagtctcatgctcggatgaga
ataagtaaagaaggcgttctttatgccggcagcgggaagaaagataaatccatggaccct
aataaaaaagcttatctgcaaagaaaactggattctaaactgaaagatatggcatcacag
aggaaaaccaaaaacaaagaaaaggacacttga
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